Evidence map›Paper›PMID 26930493›Full record

ArticlePloS one2016

Dihydrofolate-Reductase Mutations in Plasmodium knowlesi Appear Unrelated to Selective Drug Pressure from Putative Human-To-Human Transmission in Sabah, Malaysia.

Matthew J Grigg, Bridget E Barber, Jutta Marfurt, Mallika Imwong, Timothy William, Elspeth Bird, Kim A Piera, Ammar Aziz, Usa Boonyuen, Christopher J Drakeley and 6 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 25 citations in OpenAlex.

  1. Pooled it
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  11. Infection and drug resistance · 2018
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 5 countries.

Matthew J GriggMenzies School of Health Research and Charles Darwin University, Darwin, Northern Territory, Australia.
Bridget E BarberMenzies School of Health Research and Charles Darwin University, Darwin, Northern Territory, Australia.
Jutta MarfurtMenzies School of Health Research and Charles Darwin University, Darwin, Northern Territory, Australia.
Mallika ImwongDepartment of Molecular Tropical Medicine and Genetics, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand.
Timothy WilliamInfectious Diseases Society Sabah-Menzies School of Health Research Clinical Research Unit, Kota Kinabalu, Sabah, Malaysia.
Elspeth BirdInfectious Diseases Society Sabah-Menzies School of Health Research Clinical Research Unit, Kota Kinabalu, Sabah, Malaysia.
Kim A PieraMenzies School of Health Research and Charles Darwin University, Darwin, Northern Territory, Australia.
Ammar AzizMenzies School of Health Research and Charles Darwin University, Darwin, Northern Territory, Australia.
Usa BoonyuenDepartment of Molecular Tropical Medicine and Genetics, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand.
Christopher J DrakeleyFaculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, London, United Kingdom.
Jonathan CoxFaculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, London, United Kingdom.
Nicholas J WhiteMahidol Oxford Tropical Medicine Research Unit, Mahidol University, Bangkok, Thailand.
Qin ChengAustralian Army Malaria Institute, Brisbane, Australia.
Tsin W YeoMenzies School of Health Research and Charles Darwin University, Darwin, Northern Territory, Australia.
Sarah AuburnMenzies School of Health Research and Charles Darwin University, Darwin, Northern Territory, Australia.
Nicholas M AnsteyMenzies School of Health Research and Charles Darwin University, Darwin, Northern Territory, Australia.
Charles Darwin University · AUMenzies School of Health Research · AULondon School of Hygiene & Tropical Medicine · GBMahidol Oxford Tropical Medicine Research Unit · THMahidol University · THQIMR Berghofer Medical Research Institute · AUQueen Elizabeth Hospital · MY

Funding

Medical Research Council G1100796Wellcome Trust
6 · The paper itself

Abstract

backgroundMalaria caused by zoonotic Plasmodium knowlesi is an emerging threat in Eastern Malaysia. Despite demonstrated vector competency, it is unknown whether human-to-human (H-H) transmission is occurring naturally. We sought evidence of drug selection pressure from the antimalarial sulfadoxine-pyrimethamine (SP) as a potential marker of H-H transmission.

methodsThe P. knowlesi dihdyrofolate-reductase (pkdhfr) gene was sequenced from 449 P. knowlesi malaria cases from Sabah (Malaysian Borneo) and genotypes evaluated for association with clinical and epidemiological factors. Homology modelling using the pvdhfr template was used to assess the effect of pkdhfr mutations on the pyrimethamine binding pocket.

resultsFourteen non-synonymous mutations were detected, with the most common being at codon T91P (10.2%) and R34L (10.0%), resulting in 21 different genotypes, including the wild-type, 14 single mutants, and six double mutants. One third of the P. knowlesi infections were with pkdhfr mutants; 145 (32%) patients had single mutants and 14 (3%) had double-mutants. In contrast, among the 47 P. falciparum isolates sequenced, three pfdhfr genotypes were found, with the double mutant 108N+59R being fixed and the triple mutants 108N+59R+51I and 108N+59R+164L occurring with frequencies of 4% and 8%, respectively. Two non-random spatio-temporal clusters were identified with pkdhfr genotypes. There was no association between pkdhfr mutations and hyperparasitaemia or malaria severity, both hypothesized to be indicators of H-H transmission. The orthologous loci associated with resistance in P. falciparum were not mutated in pkdhfr. Subsequent homology modelling of pkdhfr revealed gene loci 13, 53, 120, and 173 as being critical for pyrimethamine binding, however, there were no mutations at these sites among the 449 P. knowlesi isolates.

conclusionAlthough moderate diversity was observed in pkdhfr in Sabah, there was no evidence this reflected selective antifolate drug pressure in humans.

Indexed as

AdolescentAdultAgedAged, 80 and overAntimalarialsChildChild, PreschoolDrug ResistanceFemaleFolic Acid AntagonistsHumansInfantMalariaMalaysiaMaleMiddle AgedAntimalarialsFolic Acid AntagonistsPyrimethamineTetrahydrofolate Dehydrogenase

Identifiers

PMID26930493
PMCPMC4773021
OpenAlexW2292548662

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.