Evidence map›Paper›PMID 26930295›Full record

ArticleMechanisms of ageing and development2016

Genetic landscape of APOE in human longevity revealed by high-throughput sequencing.

Seungjin Ryu, Gil Atzmon, Nir Barzilai, Nalini Raghavachari, Yousin Suh

Open access · greenAbstract read
In one paragraph

Article in Mechanisms of ageing and development, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 1 pooled it
6.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 1 synthesis or guideline pooled it, 45 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Genetic associations with human longevity are enriched for oncogenic genes.medRxiv : the preprint server for health sciences · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Review
  14. Genetics of frailty: A longevity perspective.Translational research : the journal of laboratory and clinical medicine · 2020
    Review
  15. Review
  16. Sleep Deprivation and Neurological Disorders.BioMed research international · 2020
    Review
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Seungjin RyuDepartment of Genetics, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Gil AtzmonDepartment of Genetics, Albert Einstein College of Medicine, Bronx, NY 10461, USA; Department of Medicine, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Nir BarzilaiDepartment of Genetics, Albert Einstein College of Medicine, Bronx, NY 10461, USA; Department of Medicine, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Nalini RaghavachariDivision of Geriatrics and Clinical Gerontology, National Institute on Aging, Bethesda, MD 20892, USA.
Yousin SuhDepartment of Genetics, Albert Einstein College of Medicine, Bronx, NY 10461, USA; Department of Medicine, Albert Einstein College of Medicine, Bronx, NY 10461, USA; Department of Ophthalmology and Visual Sciences, Albert Einstein College of Medicine, Bronx, NY 10461, USA. Electronic address: yousin.suh@einstein.yu.edu.
Albert Einstein College of Medicine · USNational Institute on Aging · US

Funding

THE IMPACT OF CELLULAR DEFENSE ON THE ROLE OF Ku80 IN GENOME MAINTENANCE AND LONGP01AG017242 · NIA · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI VIJG, JAN · 1999 to 2023
$46.1M
Translational Research CoreP30DK020541 · NIDDK · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI STREAMSON C CHUA · 2015 to 2026
$27.7M
Einstein's Nathan Shock Center of Excellence in Basic Biology of AgingP30AG038072 · NIA · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI VIJG, JAN · 2010 to 2024
$10.8M
(PQB4) Age-cancer interplay of genome and epi-genome in human lungR01CA180126 · NCI · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI AUTON, ADAM, SPIVACK, SIMON D · 2013 to 2016
$2.8M
New Methods to Uncover Global Transcriptional Programs for Disease Risk VariantsR01GM104459 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI SUH, YOUSIN · 2013 to 2016
$2.5M
LGP/LongenityR01AG046949 · NIA · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI BARZILAI, NIR J · 2013 to 2017
$2.4M
Association Analysis- SNPs in Longevity Assurance GenesR01AG024391 · NIA · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI SUH, YOUSIN · 2004 to 2008
$1.6M
NCI NIH HHS R01 CA180126NIA NIH HHS AG024391NIA NIH HHS AG02773NIA NIH HHS AG17242NIA NIH HHS P01 AG017242NIA NIH HHS P30 AG038072NIA NIH HHS R01 AG024391NIA NIH HHS R01 AG046949NIDDK NIH HHS P30 DK020541NIGMS NIH HHS R01 GM104459
6 · The paper itself

Abstract

Apolipoprotein E (APOE) gene has been the most replicated longevity-associated gene in humans. Two common APOE alleles are either significantly depleted (ε4 allele) or enriched (ε2 allele) in long-lived individuals as compared to controls. We performed high-throughput sequencing analysis of exons and 2kb proximal promoter of APOE in 450 centenarians and 500 controls of Ashkenazi Jewish decent. We found two common regulatory variants, rs405509 (p=0.006) and rs769449 (p=0.036), that were significantly depleted in centenarians. Genotyping analysis of rs7412 and rs429358 showed significant enrichment of ε2 allele (p=0.003) and ε2/ε3 genotype (p=0.005), and significant depletion of ε3/ε4 genotype (p=0.005) in centenarians. Our findings support the hypothesis that variants in both coding and regulatory regions of APOE may contribute to longevity in humans.

Indexed as

AllelesApolipoproteins EFemaleHigh-Throughput Nucleotide SequencingHumansJewsLongevityMaleOpen Reading FramesRegulatory Sequences, Nucleic AcidApolipoproteins EAPOECentenarianGenetic variantLongevityPooled target capture sequencing

Identifiers

PMID26930295
PMCPMC4818712
OpenAlexW2286935053

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.