Evidence map›Paper›PMID 26930209›Full record

ArticlePloS one2016

Absolute Quantification of the Host-To-Parasite DNA Ratio in Theileria parva-Infected Lymphocyte Cell Lines.

Hanzel T Gotia, James B Munro, Donald P Knowles, Claudia A Daubenberger, Richard P Bishop, Joana C Silva

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.7field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Hanzel T GotiaInstitute for Genome Sciences, University of Maryland School of Medicine, 801 West Baltimore Street, Baltimore Maryland, United States of America.
James B MunroInstitute for Genome Sciences, University of Maryland School of Medicine, 801 West Baltimore Street, Baltimore Maryland, United States of America.
Donald P KnowlesAnimal Disease Research Unit, Agricultural Research Service, US Department of Agriculture, Pullman, Washington, United States of America.
Claudia A DaubenbergerSwiss Tropical and Public Health Institute, Socinstrasse 57, 4002 Basel, Switzerland.
Richard P BishopInternational Livestock Research Institute, P.O. Box 30709, Nairobi 00100, Kenya.
Joana C SilvaInstitute for Genome Sciences, University of Maryland School of Medicine, 801 West Baltimore Street, Baltimore Maryland, United States of America.
University of Maryland, Baltimore · USInternational Livestock Research Institute · KEUniversity of Basel · CHWashington State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Theileria parva is a tick-transmitted intracellular apicomplexan pathogen of cattle in sub-Saharan Africa that causes East Coast fever (ECF). ECF is an acute fatal disease that kills over one million cattle annually, imposing a tremendous burden on African small-holder cattle farmers. The pathology and level of T. parva infections in its wildlife host, African buffalo (Syncerus caffer), and in cattle are distinct. We have developed an absolute quantification method based on quantitative PCR (qPCR) in which recombinant plasmids containing single copy genes specific to the parasite (apical membrane antigen 1 gene, ama1) or the host (hypoxanthine phosphoribosyltransferase 1, hprt1) are used as the quantification reference standards. Our study shows that T. parva and bovine cells are present in similar numbers in T. parva-infected lymphocyte cell lines and that consequently, due to its much smaller genome size, T. parva DNA comprises between 0.9% and 3% of the total DNA samples extracted from these lines. This absolute quantification assay of parasite and host genome copy number in a sample provides a simple and reliable method of assessing T. parva load in infected bovine lymphocytes, and is accurate over a wide range of host-to-parasite DNA ratios. Knowledge of the proportion of target DNA in a sample, as enabled by this method, is essential for efficient high-throughput genome sequencing applications for a variety of intracellular pathogens. This assay will also be very useful in future studies of interactions of distinct host-T. parva stocks and to fully characterize the dynamics of ECF infection in the field.

Indexed as

AnimalsAnimals, WildCattleCell LineDNAHost-Parasite InteractionsLymphocytesTheileria parvaTheileriasisTicksDNA

Identifiers

PMID26930209
PMCPMC4773007
OpenAlexW2291654796

What OpenQuestion holds

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LicenceCC0
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.