Evidence map›Paper›PMID 26930200›Full record

ArticlePloS one2016

Transposon Tagging of a Male-Sterility, Female-Sterility Gene, St8, Revealed that the Meiotic MER3 DNA Helicase Activity Is Essential for Fertility in Soybean.

Jordan Baumbach, Ramesh N Pudake, Callie Johnson, Kaylin Kleinhans, Alexandrea Ollhoff, Reid G Palmer, Madan K Bhattacharyya, Devinder Sandhu

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
4.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Functional Analysis of GenesBioMed research international · 2022
    Article
  3. Article
  4. Mapping and Identifying a Candidate Gene (Frontiers in plant science · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Jordan BaumbachDepartment of Biology, University of Wisconsin-Stevens Point, Stevens Point, Wiconsin, 54481, United States of America.
Ramesh N PudakeDepartment of Agronomy, Iowa State University, Ames, Iowa, 50011, United States of America.
Callie JohnsonDepartment of Biology, University of Wisconsin-Stevens Point, Stevens Point, Wiconsin, 54481, United States of America.
Kaylin KleinhansDepartment of Biology, University of Wisconsin-Stevens Point, Stevens Point, Wiconsin, 54481, United States of America.
Alexandrea OllhoffDepartment of Biology, University of Wisconsin-Stevens Point, Stevens Point, Wiconsin, 54481, United States of America.
Reid G PalmerDepartment of Agronomy, Iowa State University, Ames, Iowa, 50011, United States of America.
Madan K BhattacharyyaDepartment of Agronomy, Iowa State University, Ames, Iowa, 50011, United States of America.
Devinder SandhuDepartment of Biology, University of Wisconsin-Stevens Point, Stevens Point, Wiconsin, 54481, United States of America.
Iowa State University · USUniversity of Wisconsin–Stevens Point · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The W4 locus in soybean encodes a dihydroflavonol-4-reductase (DFR2) that regulates pigmentation patterns in flowers and hypocotyl. The mutable w4-m allele that governs variegated flowers has arisen through insertion of a CACTA-type transposable element, Tgm9, in DFR2. In the w4-m line, reversion from variegated to purple flower indicates excision of Tgm9, and its insertion at a new locus. Previously, we have identified a male-sterile, female-sterile mutant among the selfed progenies of a revertant plant carrying only purple flowers. Co-segregation between Tgm9 and the sterility phenotype suggested that the mutant was generated by insertion of Tgm9 at the St8 locus. The transposon was localized to exon 10 of Glyma.16G072300 that shows high identity to the MER3 DNA helicase involved in crossing over. Molecular analysis of fertile branches from two independent revertant plants confirmed precise excision of Tgm9 from the st8 allele, which restored fertility. In soybean, the gene is expressed in flower-buds, trifoliate leaves and stem. Phylogenetic analysis placed St8 in a clade with the Arabidopsis and rice MER3 suggesting that St8 is most likely the orthologous MER3 soybean gene. This study established the utility of Tgm9 in gene identification as well as in forward and reverse genetics studies.

Indexed as

Alcohol OxidoreductasesChromosome WalkingDNA HelicasesDNA Transposable ElementsFertilityGenes, PlantGlycine maxMeiosisPhylogenyReverse Transcriptase Polymerase Chain ReactionSequence AlignmentAlcohol Oxidoreductasesdihydroflavanol 4-reductaseDNA HelicasesDNA Transposable Elements

Identifiers

PMID26930200
PMCPMC4773125
OpenAlexW2293926533

What OpenQuestion holds

Textmetadata
LicenceCC0
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.