Evidence map›Paper›PMID 26929302›Full record

ArticleJournal of bacteriology2016

A Membrane-Embedded Amino Acid Couples the SpoIIQ Channel Protein to Anti-Sigma Factor Transcriptional Repression during Bacillus subtilis Sporulation.

Kelly A Flanagan, Joseph D Comber, Elizabeth Mearls, Colleen Fenton, Anna F Wang Erickson, Amy H Camp

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Kelly A FlanaganDepartment of Biological Sciences, Mount Holyoke College, South Hadley, Massachusetts, USA.
Joseph D ComberDepartment of Biological Sciences, Lehigh University, Bethlehem, Pennsylvania, USA.
Elizabeth MearlsDepartment of Biological Sciences, Mount Holyoke College, South Hadley, Massachusetts, USA.
Colleen FentonDepartment of Biological Sciences, Mount Holyoke College, South Hadley, Massachusetts, USA.
Anna F Wang EricksonDepartment of Molecular and Cellular Biology, Harvard University, Cambridge, Massachusetts, USA.
Amy H CampDepartment of Biological Sciences, Mount Holyoke College, South Hadley, Massachusetts, USA acamp@mtholyoke.edu.
Mount Holyoke College · USHarvard University · USLehigh University · US

Funding

Role of RNA Polymerase in Bacterial DifferentionR01GM018568 · NIGMS · HARVARD UNIVERSITY · PI LOSICK, RICHARD MARC · 1985 to 2018
$11.5M
A Feeding Tube Model for Bacterial Cell-Cell CommunicationDP2GM105439 · NIGMS · MOUNT HOLYOKE COLLEGE · PI CAMP, AMY HITCHCOCK · 2012 to 2012
$2.1M
A Switch in Gene Expression During Bacterial DevelopmentR15GM101559 · NIGMS · MOUNT HOLYOKE COLLEGE · PI CAMP, AMY HITCHCOCK · 2012 to 2012
$276k
ROLE OF RNA POLYMERASE IN BACTERIAL DIFFERENTIATIONR37GM018568 · NIGMS · HARVARD UNIVERSITY · PI LOSICK, RICHARD MARC · 1990 to 1999
–
NCCDPHP CDC HHS DP2 GM105439NIGMS NIH HHS DP2 GM105439NIGMS NIH HHS GM18568NIGMS NIH HHS R01 GM018568NIGMS NIH HHS R15 GM101559NIGMS NIH HHS R37 GM018568
6 · The paper itself

Abstract

unlabelledSpoIIQ is an essential component of a channel connecting the developing forespore to the adjacent mother cell during Bacillus subtilis sporulation. This channel is generally required for late gene expression in the forespore, including that directed by the late-acting sigma factor σ(G) Here, we present evidence that SpoIIQ also participates in a previously unknown gene regulatory circuit that specifically represses expression of the gene encoding the anti-sigma factor CsfB, a potent inhibitor of σ(G) The csfB gene is ordinarily transcribed in the forespore only by the early-acting sigma factor σ(F) However, in a mutant lacking the highly conserved SpoIIQ transmembrane amino acid Tyr-28, csfB was also aberrantly transcribed later by σ(G), the very target of CsfB inhibition. This regulation of csfB by SpoIIQ Tyr-28 is specific, given that the expression of other σ(F)-dependent genes was unaffected. Moreover, we identified a conserved element within the csfB promoter region that is both necessary and sufficient for SpoIIQ Tyr-28-mediated inhibition. These results indicate that SpoIIQ is a bifunctional protein that not only generally promotes σ(G)activity in the forespore as a channel component but also specifically maximizes σ(G)activity as part of a gene regulatory circuit that represses σ(G)-dependent expression of its own inhibitor, CsfB. Finally, we demonstrate that SpoIIQ Tyr-28 is required for the proper localization and stability of the SpoIIE phosphatase, raising the possibility that these two multifunctional proteins cooperate to fine-tune developmental gene expression in the forespore at late times. IMPORTANCE: Cellular development is orchestrated by gene regulatory networks that activate or repress developmental genes at the right time and place. Late gene expression in the developing Bacillus subtilis spore is directed by the alternative sigma factor σ(G) The activity of σ(G)requires a channel apparatus through which the adjacent mother cell provides substrates that generally support gene expression. Here we report that the channel protein SpoIIQ also specifically maximizes σ(G)activity as part of a previously unknown regulatory circuit that prevents σ(G)from activating transcription of the gene encoding its own inhibitor, the anti-sigma factor CsfB. The discovery of this regulatory circuit significantly expands our understanding of the gene regulatory network controlling late gene expression in the developing B. subtilis spore.

Indexed as

Gene Expression Regulation, BacterialAmino AcidsBacillus subtilisBacterial ProteinsGene ExpressionGene Regulatory NetworksMutationSequence AlignmentSigma FactorSpores, BacterialTranscription FactorsAmino AcidsBacterial ProteinsSigma FactorTranscription Factors

Identifiers

PMID26929302
PMCPMC4836239
OpenAlexW2288981696

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.