Evidence map›Paper›PMID 26928990›Full record

ArticleMolecular microbiology2016

Structural and biochemical characterization of EDTA monooxygenase and its physical interaction with a partner flavin reductase.

Se-Young Jun, Kevin M Lewis, Buhyun Youn, Luying Xun, ChulHee Kang

Abstract read
In one paragraph

Article in Molecular microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Structural, biophysical, and biochemical insights into C-S bond cleavage by dimethylsulfone monooxygenase.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Microbial Degradation of Pyridine: a Complete Pathway inApplied and environmental microbiology · 2020
    Article
  7. Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Se-Young JunDepartment of Chemistry, Washington State University, Pullman, WA, 99164-4630, USA.
Kevin M LewisDepartment of Chemistry, Washington State University, Pullman, WA, 99164-4630, USA.
Buhyun YounDepartment of Chemistry, Washington State University, Pullman, WA, 99164-4630, USA.
Luying XunSchool of Molecular Biosciences, Washington State University, Pullman, WA, 99164-4660, USA.
ChulHee KangDepartment of Chemistry, Washington State University, Pullman, WA, 99164-4630, USA.

Funding

Roles of Calsequestrin in the Control of Calcium Signals in Health and DiseaseR01GM111254 · NIGMS · RUSH UNIVERSITY MEDICAL CENTER · PI KANG, CHULHEE, RIOS, EDUARDO · 2014 to 2017
$1.4M
NIGMS NIH HHS R01 GM111254
6 · The paper itself

Abstract

Ethylenediaminetetraacetate (EDTA) is currently the most abundant organic pollutant due to its recalcitrance and extensive use. Only a few bacteria can degrade it, using EDTA monooxygenase (EmoA) to initiate the degradation. EmoA is an FMNH2 -dependent monooxygenase that requires an NADH:FMN oxidoreductase (EmoB) to provide FMNH2 as a cosubstrate. Although EmoA has been identified from Chelativorans (ex. Mesorhizobium) sp. BNC1, its catalytic mechanism is unknown. Crystal structures of EmoA revealed a domain-like insertion into a TIM-barrel, which might serve as a flexible lid for the active site. Docking of MgEDTA(2-) into EmoA identified an intricate hydrogen bond network connected to Tyr(71) , which should potentially lower its pKa. Tyr(71) , along with nearby Glu(70) and a peroxy flavin, facilitates a keto-enol transition of the leaving acetyl group of EDTA. Further, for the first time, the physical interaction between EmoA and EmoB was observed by ITC, molecular docking and enzyme kinetic assay, which enhanced both EmoA and EmoB activities probably through coupled channelling of FMNH2 .

Indexed as

Amino Acid SequenceCatalysisCatalytic DomainEdetic AcidFlavin MononucleotideFlavinsFMN ReductaseHydroquinonesMixed Function OxygenasesModels, MolecularMolecular Docking SimulationNADH, NADPH OxidoreductasesOxidoreductasesOxidoreductases Acting on CH-NH Group DonorsPhyllobacteriaceaeStructure-Activity RelationshipEdetic AcidEDTA monooxygenaseFlavin Mononucleotideflavin mononucleotide hydroquinoneFlavinsFMN ReductaseHydroquinonesMixed Function OxygenasesNADH, NADPH OxidoreductasesOxidoreductasesOxidoreductases Acting on CH-NH Group Donors

Identifiers

PMID26928990
PMCPMC4899218

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.