Evidence map›Paper›PMID 26928050›Full record

ArticlePLoS neglected tropical diseases2016

High Resolution Melting Analysis Targeting hsp70 as a Fast and Efficient Method for the Discrimination of Leishmania Species.

Ricardo Andrade Zampieri, Maria Fernanda Laranjeira-Silva, Sandra Marcia Muxel, Ana Carolina Stocco de Lima, Jeffrey Jon Shaw, Lucile Maria Floeter-Winter

Open access · goldAbstract readEvaluation Study
In one paragraph

Article in PLoS neglected tropical diseases, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 72 citations in OpenAlex.

  1. Article
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  5. Assessment of High-Resolution Melting Curve Analysis forPathogens (Basel, Switzerland) · 2024
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  8. HRM Accuracy and Limitations as a Species Typing Tool forInternational journal of molecular sciences · 2023
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  10. Detection ofAnimals : an open access journal from MDPI · 2023
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  12. Evaluation of the Diagnostic Sensitivity of the VIASURETransboundary and emerging diseases · 2023
    Article
  13. Accurate Identification ofJournal of arthropod-borne diseases · 2022
    Article
  14. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Ricardo Andrade ZampieriPhysiology Department, Biosciences Institute, São Paulo University, São Paulo, São Paulo, Brazil.
Maria Fernanda Laranjeira-SilvaPhysiology Department, Biosciences Institute, São Paulo University, São Paulo, São Paulo, Brazil.
Sandra Marcia MuxelPhysiology Department, Biosciences Institute, São Paulo University, São Paulo, São Paulo, Brazil.
Ana Carolina Stocco de LimaPathology Department, Medical Faculty, São Paulo University, São Paulo, São Paulo, Brazil.
Jeffrey Jon ShawParasitology Department, Biomedical Institute, São Paulo University, São Paulo, São Paulo, Brazil.
Lucile Maria Floeter-WinterPhysiology Department, Biosciences Institute, São Paulo University, São Paulo, São Paulo, Brazil.
Universidade de São Paulo · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundProtozoan parasites of the genus Leishmania cause a large spectrum of clinical manifestations known as Leishmaniases. These diseases are increasingly important public health problems in many countries both within and outside endemic regions. Thus, an accurate differential diagnosis is extremely relevant for understanding epidemiological profiles and for the administration of the best therapeutic protocol. METHODS/PRINCIPAL

findingsExploring the High Resolution Melting (HRM) dissociation profiles of two amplicons using real time polymerase chain reaction (real-time PCR) targeting heat-shock protein 70 coding gene (hsp70) revealed differences that allowed the discrimination of genomic DNA samples of eight Leishmania species found in the Americas, including Leishmania (Leishmania) infantum chagasi, L. (L.) amazonensis, L. (L.) mexicana, L. (Viannia) lainsoni, L. (V.) braziliensis, L. (V.) guyanensis, L. (V.) naiffi and L. (V.) shawi, and three species found in Eurasia and Africa, including L. (L.) tropica, L. (L.) donovani and L. (L.) major. In addition, we tested DNA samples obtained from standard promastigote culture, naturally infected phlebotomines, experimentally infected mice and clinical human samples to validate the proposed protocol. CONCLUSIONS/SIGNIFICANCE: HRM analysis of hsp70 amplicons is a fast and robust strategy that allowed for the detection and discrimination of all Leishmania species responsible for the Leishmaniases in Brazil and Eurasia/Africa with high sensitivity and accuracy. This method could detect less than one parasite per reaction, even in the presence of host DNA.

Indexed as

AnimalsBase SequenceDNA, ProtozoanHSP72 Heat-Shock ProteinsHumansLeishmaniaLeishmaniasisMiceMice, Inbred BALB CMolecular Sequence DataProtozoan ProteinsReal-Time Polymerase Chain ReactionSequence Analysis, DNATransition TemperatureDNA, ProtozoanHSP72 Heat-Shock ProteinsProtozoan Proteins

Identifiers

PMID26928050
PMCPMC4771719
OpenAlexW2289712869

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.