Evidence map›Paper›PMID 26927947›Full record

ArticleScientific reports2016

Structural basis for the regulation of enzymatic activity of Regnase-1 by domain-domain interactions.

Mariko Yokogawa, Takashi Tsushima, Nobuo N Noda, Hiroyuki Kumeta, Yoshiaki Enokizono, Kazuo Yamashita, Daron M Standley, Osamu Takeuchi, Shizuo Akira, Fuyuhiko Inagaki

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
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  8. Crystallization and biochemical studies of the NYN domain of human KHNYN.Acta crystallographica. Section F, Structural biology communications · 2024
    Article
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  10. Review
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  19. Analysis of Protein Intermolecular Interactions with MAFFT-DASH.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Mariko YokogawaFaculty of Advanced Life Science, Hokkaido University, Sapporo 001-0021, Japan.
Takashi TsushimaGraduate school of Life Science, Hokkaido University, Sapporo 060-0810, Japan.
Nobuo N NodaInstitute of Microbial Chemistry, Microbial Chemistry Research Foundation, Tokyo 141-0021, Japan.
Hiroyuki KumetaFaculty of Advanced Life Science, Hokkaido University, Sapporo 001-0021, Japan.
Yoshiaki EnokizonoFaculty of Advanced Life Science, Hokkaido University, Sapporo 001-0021, Japan.
Kazuo YamashitaWorld Premier International Immunology Frontier Research Center, Osaka University, Osaka 565-0871, Japan.
Daron M StandleyWorld Premier International Immunology Frontier Research Center, Osaka University, Osaka 565-0871, Japan.
Osamu TakeuchiWorld Premier International Immunology Frontier Research Center, Osaka University, Osaka 565-0871, Japan.
Shizuo AkiraWorld Premier International Immunology Frontier Research Center, Osaka University, Osaka 565-0871, Japan.
Fuyuhiko InagakiFaculty of Advanced Life Science, Hokkaido University, Sapporo 001-0021, Japan.
Hokkaido University · JPOsaka University · JPKyoto University · JPMicrobial Chemistry Research Foundation · JPOsaka International University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Regnase-1 is an RNase that directly cleaves mRNAs of inflammatory genes such as IL-6 and IL-12p40, and negatively regulates cellular inflammatory responses. Here, we report the structures of four domains of Regnase-1 from Mus musculus-the N-terminal domain (NTD), PilT N-terminus like (PIN) domain, zinc finger (ZF) domain and C-terminal domain (CTD). The PIN domain harbors the RNase catalytic center; however, it is insufficient for enzymatic activity. We found that the NTD associates with the PIN domain and significantly enhances its RNase activity. The PIN domain forms a head-to-tail oligomer and the dimer interface overlaps with the NTD binding site. Interestingly, mutations blocking PIN oligomerization had no RNase activity, indicating that both oligomerization and NTD binding are crucial for RNase activity in vitro. These results suggest that Regnase-1 RNase activity is tightly controlled by both intramolecular (NTD-PIN) and intermolecular (PIN-PIN) interactions.

Indexed as

AnimalsBinding SitesCrystallography, X-RayInflammationMiceModels, MolecularMutationProtein BindingProtein ConformationProtein DomainsProtein EngineeringProtein MultimerizationRibonucleasesStructure-Activity RelationshipRibonucleasesZc3h12a protein, mouse

Identifiers

PMID26927947
PMCPMC4772114
OpenAlexW2288303312

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.