ArticlePloS one2016
Metagenomic Characterisation of the Viral Community of Lough Neagh, the Largest Freshwater Lake in Ireland.
Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers, 1 of them a synthesis that pooled it.
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Who cites it
34 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Storm impacts on phytoplankton community dynamics in lakes.Global change biology · 2020Pooled it
- Genomic Analysis and Taxonomic Characterization of Seven Bacteriophage Genomes Metagenomic-Assembled from the Dishui Lake.Viruses · 2023Article
- Lower viral evolutionary pressure under stable versus fluctuating conditions in subzero Arctic brines.Microbiome · 2023Article
- A TemperateViruses · 2023Article
- Metagenomic analysis of wastewater phageome from a University Hospital in Turkey.Archives of microbiology · 2022Article
- Insights into the global freshwater virome.Frontiers in microbiology · 2022Article
- Saline lakes on the Qinghai-Tibet Plateau harbor unique viral assemblages mediating microbial environmental adaption.iScience · 2021Article
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- Glacier ice archives nearly 15,000-year-old microbes and phages.Microbiome · 2021Article
- Occurrence and diversity of viruses associated with cyanobacterial communities in a Brazilian freshwater reservoir.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2021Article
- Analysis of Different Size Fractions Provides a More Complete Perspective of Viral Diversity in a Freshwater Embayment.Applied and environmental microbiology · 2021Article
- Extended Evaluation of Viral Diversity in Lake Baikal through Metagenomics.Microorganisms · 2021Article
- Metaviromics coupled with phage-host identification to open the viral 'black box'.Journal of microbiology (Seoul, Korea) · 2021Review
- Article
- Seasonal dynamics in taxonomy and function within bacterial and viral metagenomic assemblages recovered from a freshwater agricultural pond.Environmental microbiome · 2020Article
- Virus and Potential Host Microbes from Viral-Enriched Metagenomic Characterization in the High-Altitude Wetland, Salar de Huasco, Chile.Microorganisms · 2020Article
- Freshwater viral metagenome reveals novel and functional phage-borne antibiotic resistance genes.Microbiome · 2020Article
- Article
- Phage-centric ecological interactions in aquatic ecosystems revealed through ultra-deep metagenomics.Microbiome · 2019Article
- Metagenomic Analysis of Virus Diversity and Relative Abundance in a Eutrophic Freshwater Harbour.Viruses · 2019Article
Corrections and comments
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Authors and funding
10 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Lough Neagh is the largest and the most economically important lake in Ireland. It is also one of the most nutrient rich amongst the world's major lakes. In this study, 16S rRNA analysis of total metagenomic DNA from the water column of Lough Neagh has revealed a high proportion of Cyanobacteria and low levels of Actinobacteria, Acidobacteria, Chloroflexi, and Firmicutes. The planktonic virome of Lough Neagh has been sequenced and 2,298,791 2×300 bp Illumina reads analysed. Comparison with previously characterised lakes demonstrates that the Lough Neagh viral community has the highest level of sequence diversity. Only about 15% of reads had homologs in the RefSeq database and tailed bacteriophages (Caudovirales) were identified as a major grouping. Within the Caudovirales, the Podoviridae and Siphoviridae were the two most dominant families (34.3% and 32.8% of the reads with sequence homology to the RefSeq database), while ssDNA bacteriophages constituted less than 1% of the virome. Putative cyanophages were found to be abundant. 66,450 viral contigs were assembled with the largest one being 58,805 bp; its existence, and that of another 34,467 bp contig, in the water column was confirmed. Analysis of the contigs confirmed the high abundance of cyanophages in the water column.
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