Evidence map›Paper›PMID 26927448›Full record

ArticleBMC systems biology2016

The game theory of Candida albicans colonization dynamics reveals host status-responsive gene expression.

Katarzyna M Tyc, Sanna E Herwald, Jennifer A Hogan, Jessica V Pierce, Edda Klipp, Carol A Kumamoto

Open access · diamondAbstract read
In one paragraph

Article in BMC systems biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. mSphere · 2020
    Article
  7. Trends in mathematical modeling of host-pathogen interactions.Cellular and molecular life sciences : CMLS · 2020
    Review
  8. Review
  9. The mammalian mycobiome: A complex system in a dynamic relationship with the host.Wiley interdisciplinary reviews. Systems biology and medicine · 2019
    Review
  10. Modelling the host-pathogen interactions of macrophages andJournal of the Royal Society, Interface · 2017
    Article
  11. Immunity to Commensal Fungi: Detente and Disease.Annual review of pathology · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Katarzyna M TycTheoretische Biophysik, Humboldt-Universität zu Berlin, Invalidenstraße 42, D-10115, Berlin, Germany. katarzyna.tyc@gmail.com.
Sanna E HerwaldGraduate Program in Molecular Microbiology, Sackler School of Graduate Biomedical Sciences and Department of Molecular Biology and Microbiology, Tufts University, Boston, MA, 02111, USA. Sanna.Herwald@tufts.edu.
Jennifer A HoganGraduate Program in Molecular Microbiology, Sackler School of Graduate Biomedical Sciences and Department of Molecular Biology and Microbiology, Tufts University, Boston, MA, 02111, USA. hoganja@gmail.com.
Jessica V PierceGraduate Program in Molecular Microbiology, Sackler School of Graduate Biomedical Sciences and Department of Molecular Biology and Microbiology, Tufts University, Boston, MA, 02111, USA. jvpierce519@gmail.com.
Edda KlippTheoretische Biophysik, Humboldt-Universität zu Berlin, Invalidenstraße 42, D-10115, Berlin, Germany. edda.klipp@rz.hu-berlin.de.
Carol A KumamotoGraduate Program in Molecular Microbiology, Sackler School of Graduate Biomedical Sciences and Department of Molecular Biology and Microbiology, Tufts University, Boston, MA, 02111, USA. carol.kumamoto@tufts.edu.
Tufts University · USHumboldt-Universität zu Berlin · DEUniversity of Utah · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAM AT TUFTS UNIVERSITYT32GM008448 · NIGMS · TUFTS UNIVERSITY BOSTON · PI CHIN, MICHAEL T · 1994 to 2022
$9.1M
MOLECULAR ANALYSIS OF MICROBIAL PATHOGENST32AI007422 · NIAID · TUFTS UNIVERSITY BOSTON · PI Ralph R. Isberg · 1992 to 2026
$5.7M
Contact sensing and C. albicans-host interactionR01AI081794 · NIAID · TUFTS UNIVERSITY BOSTON · PI KUMAMOTO, CAROL A. · 2010 to 2014
$2.2M
NIAID NIH HHS R01 AI081794NIAID NIH HHS R01AI081794NIAID NIH HHS R01AI081794-02S1NIAID NIH HHS T32 AI007422NIAID NIH HHS T32AI07422NIGMS NIH HHS T32 GM008448NIGMS NIH HHS T32GM008448
6 · The paper itself

Abstract

backgroundThe fungal pathogen Candida albicans colonizes the gastrointestinal (GI) tract of mammalian hosts as a benign commensal. However, in an immunocompromised host, the fungus is capable of causing life-threatening infection. We previously showed that the major transcription factor Efg1p is differentially expressed in GI-colonizing C. albicans cells dependent on the host immune status. To understand the mechanisms that underlie this host-dependent differential gene expression, we utilized mathematical modeling to dissect host-pathogen interactions. Specifically, we used principles of evolutionary game theory to study the mechanism that governs dynamics of EFG1 expression during C. albicans colonization.

resultsMathematical modeling predicted that down-regulation of EFG1 expression within individual fungal cells occurred at different average rates in different hosts. Rather than using relatively transient signaling pathways to adapt to a new environment, we demonstrate that C. albicans overcomes the host defense strategy by modulating the activity of diverse fungal histone modifying enzymes that control EFG1 expression.

conclusionBased on our modeling and experimental results we conclude that C. albicans cells sense the local environment of the GI tract and respond to differences by altering EFG1 expression to establish optimal survival strategies. We show that the overall process is governed via modulation of epigenetic regulators of chromatin structure.

Indexed as

Game TheoryGene Expression Regulation, FungalHost-Pathogen InteractionsModels, BiologicalCandida albicansDNA-Binding ProteinsEvolution, MolecularFungal ProteinsGastrointestinal TractHistonesTranscription FactorsTuberculosis, GastrointestinalDNA-Binding ProteinsEFG1 protein, Candida albicansFungal ProteinsHistonesTranscription Factors

Identifiers

PMID26927448
PMCPMC4772284
OpenAlexW2291456580

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.