Evidence map›Paper›PMID 26927424›Full record

ArticleBioorganic & medicinal chemistry letters2016

Synthesis and evaluation of an alkyne-modified ATP analog for enzymatic incorporation into RNA.

Yuxuan Zheng, Peter A Beal

Open access · greenAbstract read
In one paragraph

Article in Bioorganic & medicinal chemistry letters, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
4.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. DualACS medicinal chemistry letters · 2024
    Article
  3. Functionalised Cofactor Mimics for Interactome Discovery and Beyond.Angewandte Chemie (International ed. in English) · 2022
    Review
  4. Article
  5. Total RNA Synthesis and its Covalent Labeling Innovation.Topics in current chemistry (Cham) · 2022
    Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Transcriptome-wide discovery of coding and noncoding RNA-binding proteins.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  18. NJournal of the American Chemical Society · 2017
    Article
  19. Photo-controlled cell-specific metabolic labeling of RNA.Organic & biomolecular chemistry · 2017
    Article
  20. Metabolic Incorporation of Azide Functionality into Cellular RNA.Chembiochem : a European journal of chemical biology · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Yuxuan ZhengUniversity of California, Davis, Department of Chemistry, One Shields Ave, Davis 95616, CA, USA.
Peter A BealUniversity of California, Davis, Department of Chemistry, One Shields Ave, Davis 95616, CA, USA. Electronic address: pabeal@ucdavis.edu.
University of California, Davis · US

Funding

Supplement for CSULB Maximizing Access to Research Careers (MARC) UNDERGRADUATE STUDENT TRAINING IN ACADEMIC RESEARCH (U-STAR)T34GM008074 · NIGMS · CALIFORNIA STATE UNIVERSITY LONG BEACH · PI NARAYANASWAMI, VASANTHY · 1985 to 2022
$4.6M
Nucleobase analogs for next generation siRNAsR01GM080784 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BEAL, PETER A. · 2007 to 2020
$3.5M
ACQUISITION OF 500 MHZ NMR SPECTROMETERS10RR011973 · NCRR · UNIVERSITY OF CALIFORNIA DAVIS · PI LA MAR, GERD N · 1997 to 1997
–
NCRR NIH HHS S10 RR011973NIGMS NIH HHS R01 GM080784NIGMS NIH HHS T34 GM008074
6 · The paper itself

Abstract

Alkyne-modified nucleoside analogs are useful for nucleic acid localization as well as functional and structural studies because of their ability to participate in copper-catalyzed azide/alkyne cycloaddition (CuAAC) reactions. Here we describe the synthesis of the triphosphate of 7-ethynyl-8-aza-7-deazaadenosine (7-EAATP) and the enzymatic incorporation of 7-EAA into RNA. The free nucleoside of 7-EAA is taken up by HeLa cells and incorporated into cellular RNA by endogenous RNA polymerases. In addition, 7-EAATP is a substrate for both T7 RNA polymerase and poly (A) polymerase from Escherichia coli in vitro, albeit at lower efficiencies than with ATP. This work adds to the toolbox of nucleoside analogs useful for RNA labeling.

Indexed as

Adenosine TriphosphateAlkynesBacteriophage T7Click ChemistryDNA-Directed RNA PolymerasesEscherichia coliHeLa CellsHumansModels, MolecularPoly ARNAAdenosine TriphosphateAlkynesDNA-Directed RNA PolymerasesPoly ARNAATP analogsCellular RNA labelingClick chemistryPolyadenylationT7 transcription

Identifiers

PMID26927424
PMCPMC4785081
OpenAlexW2285827010

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.