Evidence map›Paper›PMID 26926518›Full record

ArticleBMC genomics2016

Hologenome analysis of two marine sponges with different microbiomes.

Taewoo Ryu, Loqmane Seridi, Lucas Moitinho-Silva, Matthew Oates, Yi Jin Liew, Charalampos Mavromatis, Xiaolei Wang, Annika Haywood, Feras F Lafi, Marija Kupresanin and 14 more

Abstract read
In one paragraph

Article in BMC genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

  1. Investigations of the Evolved Molecular Basis for Terpenoid Biosynthesis in Marine Sponges.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
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  12. On the origin of appetite: GLWamide in jellyfish represents an ancestral satiety neuropeptide.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  13. Terpene biosynthesis in marine sponge animals.Proceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Taewoo RyuKAUST Environmental Epigenetic Program (KEEP), King Abdullah University of Science and Technology, Thuwal, 23955-6900, Kingdom of Saudi Arabia. TaewooRyu16@apcc21.org.
Loqmane SeridiKAUST Environmental Epigenetic Program (KEEP), King Abdullah University of Science and Technology, Thuwal, 23955-6900, Kingdom of Saudi Arabia. loqmane.seridi@kaust.edu.sa.
Lucas Moitinho-SilvaSchool of Biotechnology and Biomolecular Sciences & Centre for Marine Bio-Innovation, University of New South Wales Sydney, Sydney, Australia. lucmoitinho@gmail.com.
Matthew OatesDepartment of Computer Science, University of Bristol, 24 Tyndall Ave, Bristol, UK. matt.oates@bristol.ac.uk.
Yi Jin LiewDivision of Biological and Environmental Sciences & Engineering, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Kingdom of Saudi Arabia. yijin.liew@kaust.edu.sa.
Charalampos MavromatisKAUST Environmental Epigenetic Program (KEEP), King Abdullah University of Science and Technology, Thuwal, 23955-6900, Kingdom of Saudi Arabia.
Xiaolei WangComputer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Kingdom of Saudi Arabia. xiaolei.wang@kaust.edu.sa.
Annika HaywoodDivision of Biological and Environmental Sciences & Engineering, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Kingdom of Saudi Arabia. annika@kiwinewf.com.
Feras F LafiDivision of Biological and Environmental Sciences & Engineering, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Kingdom of Saudi Arabia. feras.lafi@kaust.edu.sa.
Marija KupresaninKAUST Environmental Epigenetic Program (KEEP), King Abdullah University of Science and Technology, Thuwal, 23955-6900, Kingdom of Saudi Arabia. marija.kupresanin@kaust.edu.sa.
Rachid SougratImaging and characterization Lab, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Kingdom of Saudi Arabia. rachid.sougrat@kaust.edu.sa.
Majed A AlzahraniComputer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Kingdom of Saudi Arabia. majed.alzahrani@kaust.edu.sa.
Emily GilesDivision of Biological and Environmental Sciences & Engineering, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Kingdom of Saudi Arabia. emily.c.giles@gmail.com.
Yanal GhoshehKAUST Environmental Epigenetic Program (KEEP), King Abdullah University of Science and Technology, Thuwal, 23955-6900, Kingdom of Saudi Arabia. yanal.ghosheh@kaust.edu.sa.
Celia SchunterKAUST Environmental Epigenetic Program (KEEP), King Abdullah University of Science and Technology, Thuwal, 23955-6900, Kingdom of Saudi Arabia. celia.schunter@kaust.edu.sa.
Sebastian BaumgartenDivision of Biological and Environmental Sciences & Engineering, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Kingdom of Saudi Arabia. sebastian.baumgarten@kaust.edu.sa.
Michael L BerumenDivision of Biological and Environmental Sciences & Engineering, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Kingdom of Saudi Arabia. michael.berumen@kaust.edu.sa.
Xin GaoComputer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Kingdom of Saudi Arabia. xin.gao@kaust.edu.sa.
Manuel ArandaDivision of Biological and Environmental Sciences & Engineering, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Kingdom of Saudi Arabia. manuel.aranda@kaust.edu.sa.
Sylvain ForetDivision of Evolution, Ecology and Genetics, Research School of Biology, The Australian National University, Canberra, ACT 2601, Australia. sylvain.foret@anu.edu.au.
Julian GoughDepartment of Computer Science, University of Bristol, 24 Tyndall Ave, Bristol, UK. julian.gough@bristol.ac.uk.
Christian R VoolstraDivision of Biological and Environmental Sciences & Engineering, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Kingdom of Saudi Arabia. christian.voolstra@kaust.edu.sa.
Ute HentschelGEOMAR Helmholtz Centre for Ocean Research, RD3 Marine Microbiology and Christian-Albrechts University of Kiel, Düsternbrooker Weg 20, D-24105, Kiel, Germany. uhentschel@geomar.de.
Timothy RavasiKAUST Environmental Epigenetic Program (KEEP), King Abdullah University of Science and Technology, Thuwal, 23955-6900, Kingdom of Saudi Arabia. timothy.ravasi@kaust.edu.sa.

Funding

Biotechnology and Biological Sciences Research Council BB/G022771/1
6 · The paper itself

Abstract

backgroundSponges (Porifera) harbor distinct microbial consortia within their mesohyl interior. We herein analysed the hologenomes of Stylissa carteri and Xestospongia testudinaria, which notably differ in their microbiome content.

resultsOur analysis revealed that S. carteri has an expanded repertoire of immunological domains, specifically Scavenger Receptor Cysteine-Rich (SRCR)-like domains, compared to X. testudinaria. On the microbial side, metatranscriptome analyses revealed an overrepresentation of potential symbiosis-related domains in X. testudinaria.

conclusionsOur findings provide genomic insights into the molecular mechanisms underlying host-symbiont coevolution and may serve as a roadmap for future hologenome analyses.

Indexed as

AnimalsGenomeHigh-Throughput Nucleotide SequencingMicrobiotaModels, GeneticMolecular Sequence AnnotationPoriferaReceptors, ScavengerSequence Analysis, DNASymbiosisTranscriptomeReceptors, Scavenger

Identifiers

PMID26926518
PMCPMC4772301

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.