Evidence map›Paper›PMID 26926107›Full record

ArticleNucleic acids research2016

Synergistic action of master transcription factors controls epithelial-to-mesenchymal transition.

Hongyuan Chang, Yuwei Liu, Mengzhu Xue, Haiyue Liu, Shaowei Du, Liwen Zhang, Peng Wang

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers.

0numbers the graph read from it
0cells of the map it votes in
80citing papers in PubMed
7.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

80 citing papers in PubMed, 123 citations in OpenAlex.

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20 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Hongyuan ChangLaboratory of Systems Biology, Shanghai Advanced Research Institute, Chinese Academy of Sciences, 100 Haike Road, Zhangjiang High-Tech Park, Shanghai 201210, PR China University of Chinese Academy of Sciences, No. 19A Yuquan Road, Beijing 100049, PR China.
Yuwei LiuLaboratory of Systems Biology, Shanghai Advanced Research Institute, Chinese Academy of Sciences, 100 Haike Road, Zhangjiang High-Tech Park, Shanghai 201210, PR China.
Mengzhu XueLaboratory of Systems Biology, Shanghai Advanced Research Institute, Chinese Academy of Sciences, 100 Haike Road, Zhangjiang High-Tech Park, Shanghai 201210, PR China.
Haiyue LiuUniversity of Chinese Academy of Sciences, No. 19A Yuquan Road, Beijing 100049, PR China Shanghai Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yueyang Road, Shanghai 200031, PR China.
Shaowei DuLaboratory of Systems Biology, Shanghai Advanced Research Institute, Chinese Academy of Sciences, 100 Haike Road, Zhangjiang High-Tech Park, Shanghai 201210, PR China School of Life Sciences, Shanghai University, 333 Nanchen Road, Shanghai 200444, PR China.
Liwen ZhangLaboratory of Systems Biology, Shanghai Advanced Research Institute, Chinese Academy of Sciences, 100 Haike Road, Zhangjiang High-Tech Park, Shanghai 201210, PR China University of Chinese Academy of Sciences, No. 19A Yuquan Road, Beijing 100049, PR China Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zu Chong Zhi Road, Zhangjiang High-Tech Park, Shanghai 201203, PR China School of Life Science and Technology, ShanghaiTech University, 100 Haike Road, Zhangjiang High-Tech Park, Shanghai 201210, PR China.
Peng WangLaboratory of Systems Biology, Shanghai Advanced Research Institute, Chinese Academy of Sciences, 100 Haike Road, Zhangjiang High-Tech Park, Shanghai 201210, PR China University of Chinese Academy of Sciences, No. 19A Yuquan Road, Beijing 100049, PR China School of Life Science and Technology, ShanghaiTech University, 100 Haike Road, Zhangjiang High-Tech Park, Shanghai 201210, PR China wangpeng@sari.ac.cn.
Shanghai Advanced Research Institute · CNShanghai Institutes for Biological Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Epithelial-to-mesenchymal transition (EMT) is a complex multistep process in which phenotype switches are mediated by a network of transcription factors (TFs). Systematic characterization of all dynamic TFs controlling EMT state transitions, especially for the intermediate partial-EMT state, represents a highly relevant yet largely unexplored task. Here, we performed a computational analysis that integrated time-course EMT transcriptomic data with public cistromic data and identified three synergistic master TFs (ETS2, HNF4A and JUNB) that regulate the transition through the partial-EMT state. Overexpression of these regulators predicted a poor clinical outcome, and their elimination readily abolished TGF-β-induced EMT. Importantly, these factors utilized a clique motif, physically interact and their cumulative binding generally characterized EMT-associated genes. Furthermore, analyses of H3K27ac ChIP-seq data revealed that ETS2, HNF4A and JUNB are associated with super-enhancers and the administration of BRD4 inhibitor readily abolished TGF-β-induced EMT. These findings have implications for systematic discovery of master EMT regulators and super-enhancers as novel targets for controlling metastasis.

Indexed as

Gene Expression Regulation, NeoplasticAdenocarcinomaAdenocarcinoma of LungAntineoplastic AgentsAzepinesBromodomain Containing ProteinsCell Cycle ProteinsCell Line, TumorEpithelial CellsEpithelial-Mesenchymal TransitionGene Expression ProfilingHepatocyte Nuclear Factor 4HistonesHumansLung NeoplasmsNuclear ProteinsAntineoplastic AgentsAzepinesBRD4 protein, humanBromodomain Containing ProteinsCell Cycle ProteinsETS2 protein, humanHepatocyte Nuclear Factor 4HistonesHNF4A protein, human(+)-JQ1 compoundJunB protein, humanNuclear ProteinsProto-Oncogene Protein c-ets-2RNA, Small InterferingSmad3 ProteinSMAD3 protein, humanTranscription FactorsTransforming Growth Factor betaTriazoles

Identifiers

PMID26926107
PMCPMC4824118
OpenAlexW2290985779

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.