Evidence map›Paper›PMID 26925038›Full record

ArticleFrontiers in microbiology2016

Intracellular Isotope Localization in Ammonia sp. (Foraminifera) of Oxygen-Depleted Environments: Results of Nitrate and Sulfate Labeling Experiments.

Hidetaka Nomaki, Joan M Bernhard, Akizumi Ishida, Masashi Tsuchiya, Katsuyuki Uematsu, Akihiro Tame, Tomo Kitahashi, Naoto Takahata, Yuji Sano, Takashi Toyofuku

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Hidetaka NomakiDepartment of Biogeochemistry, Japan Agency for Marine-Earth Science and Technology Yokosuka, Japan.
Joan M BernhardGeology and Geophysics Department, Woods Hole Oceanographic Institution Woods Hole, MA, USA.
Akizumi IshidaDepartment of Chemical Oceanography, Atmosphere and Ocean Research Institute, The University of Tokyo Kashiwa, Japan.
Masashi TsuchiyaDepartment of Marine Biodiversity, Japan Agency for Marine-Earth Science and Technology Yokosuka, Japan.
Katsuyuki UematsuMarine Works Yokosuka, Japan.
Akihiro TameMarine Works Yokosuka, Japan.
Tomo KitahashiProject Team for Research and Development of Next-generation Technology for Ocean Resources Exploration, Japan Agency for Marine-Earth Science and Technology Yokosuka, Japan.
Naoto TakahataDepartment of Chemical Oceanography, Atmosphere and Ocean Research Institute, The University of Tokyo Kashiwa, Japan.
Yuji SanoDepartment of Chemical Oceanography, Atmosphere and Ocean Research Institute, The University of Tokyo Kashiwa, Japan.
Takashi ToyofukuDepartment of Marine Biodiversity, Japan Agency for Marine-Earth Science and Technology Yokosuka, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Some benthic foraminiferal species are reportedly capable of nitrate storage and denitrification, however, little is known about nitrate incorporation and subsequent utilization of nitrate within their cell. In this study, we investigated where and how much (15)N or (34)S were assimilated into foraminiferal cells or possible endobionts after incubation with isotopically labeled nitrate and sulfate in dysoxic or anoxic conditions. After 2 weeks of incubation, foraminiferal specimens were fixed and prepared for Transmission Electron Microscopy (TEM) and correlative nanometer-scale secondary ion mass spectrometry (NanoSIMS) analyses. TEM observations revealed that there were characteristic ultrastructural features typically near the cell periphery in the youngest two or three chambers of the foraminifera exposed to anoxic conditions. These structures, which are electron dense and ~200-500 nm in diameter and co-occurred with possible endobionts, were labeled with (15)N originated from (15)N-labeled nitrate under anoxia and were labeled with both (15)N and (34)S under dysoxia. The labeling with (15)N was more apparent in specimens from the dysoxic incubation, suggesting higher foraminiferal activity or increased availability of the label during exposure to oxygen depletion than to anoxia. Our results suggest that the electron dense bodies in Ammonia sp. play a significant role in nitrate incorporation and/or subsequent nitrogen assimilation during exposure to dysoxic to anoxic conditions.

Indexed as

denitrificationelectron dense bodyendobiontsforaminiferNanoSIMSnitrateultrastructure

Identifiers

PMID26925038
PMCPMC4759270

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.