Evidence map›Paper›PMID 26924556›Full record

ArticleJournal of the American Chemical Society2016

A Segregated, Partially Oxidized, and Compact Ag10 Cluster within an Encapsulating DNA Host.

Jeffrey T Petty, Orlin O Sergev, Mainak Ganguly, Ian J Rankine, Daniel M Chevrier, Peng Zhang

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
6.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 80 citations in OpenAlex.

  1. Article
  2. Article
  3. Nonradiative Deactivation of the Fluorescent AgThe journal of physical chemistry letters · 2024
    Article
  4. Article
  5. Article
  6. Interrupted DNA and Slow Silver Cluster Luminescence.The journal of physical chemistry. C, Nanomaterials and interfaces · 2023
    Article
  7. Article
  8. Massively Parallel Selection of NanoCluster Beacons.Advanced materials (Deerfield Beach, Fla.) · 2022
    Article
  9. Review
  10. Review
  11. Article
  12. Removal of the ARSC advances · 2020
    Article
  13. Article
  14. Article
  15. Atomic Structure of a Fluorescent AgJournal of the American Chemical Society · 2019
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Jeffrey T PettyDepartment of Chemistry, Furman University , Greenville, South Carolina 29613, United States.
Orlin O SergevDepartment of Chemistry, Furman University , Greenville, South Carolina 29613, United States.
Mainak GangulyDepartment of Chemistry, Furman University , Greenville, South Carolina 29613, United States.
Ian J RankineDepartment of Chemistry, Furman University , Greenville, South Carolina 29613, United States.
Daniel M ChevrierDepartment of Chemistry, Dalhousie University , Halifax, Nova Scotia B3H 4R2, Canada.
Peng ZhangDepartment of Chemistry, Dalhousie University , Halifax, Nova Scotia B3H 4R2, Canada.
Furman University · USDalhousie University · CA

Funding

Biosensing using DNA Nanoreactors that Transform Chromophoric Silver ClustersR15GM102818 · NIGMS · FURMAN UNIVERSITY · PI PETTY, JEFFREY THOMAS · 2013 to 2013
$323k
NIGMS NIH HHS 1R15GM102818NIGMS NIH HHS R15 GM102818
6 · The paper itself

Abstract

Silver clusters develop within DNA strands and become optical chromophores with diverse electronic spectra and wide-ranging emission intensities. These studies consider a specific cluster that absorbs at 400 nm, has low emission, and exclusively develops with single-stranded oligonucleotides. It is also a chameleon-like chromophore that can be transformed into different highly emissive fluorophores. We describe four characteristics of this species and conclude that it is highly oxidized yet also metallic. One, the cluster size was determined via electrospray ionization mass spectrometry. A common silver mass is measured with different oligonucleotides and thereby supports a Ag10 cluster. Two, the cluster charge was determined by mass spectrometry and Ag L3-edge X-ray absorption near-edge structure spectroscopy. Respectively, the conjugate mass and the integrated white-line intensity support a partially oxidized cluster with a +6 and +6.5 charge, respectively. Three, the cluster chirality was gauged by circular dichroism spectroscopy. This chirality changes with the length and sequence of its DNA hosts, and these studies identified a dispersed binding site with ∼20 nucleobases. Four, the structure of this complex was investigated via Ag K-edge extended X-ray absorption fine structure spectroscopy. A multishell fitting analysis identified three unique scattering environments with corresponding bond lengths, coordination numbers, and Debye-Waller factors for each. Collectively, these findings support the following conclusion: a Ag10(+6) cluster develops within a 20-nucleobase DNA binding site, and this complex segregates into a compact, metal-like silver core that weakly links to an encapsulating silver-DNA shell. We consider different models that account for silver-silver coordination within the core.

Indexed as

DNAOxidation-ReductionSilverX-Ray Absorption SpectroscopyDNASilver

Identifiers

PMID26924556
PMCPMC6118400
OpenAlexW2289909263

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.