Evidence map›Paper›PMID 26924426›Full record

ArticleScientific reports2016

A novel hepatovirus identified in wild woodchuck Marmota himalayana.

Jie-mei Yu, Li-li Li, Cui-yuan Zhang, Shan Lu, Yuan-yun Ao, Han-chun Gao, Zhi-ping Xie, Guang-cheng Xie, Xiao-man Sun, Li-li Pang and 3 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Emergence of an ancient and pathogenic mammarenavirus.Emerging microbes & infections · 2023
    Article
  7. Article
  8. Hepatitis A virus infection.Nature reviews. Disease primers · 2023
    Review
  9. Article
  10. Article
  11. Review
  12. Review
  13. Review
  14. Mode and tempo of human hepatitis virus evolution.Computational and structural biotechnology journal · 2019
    Review
  15. Article
  16. Evolutionary Origins of Enteric Hepatitis Viruses.Cold Spring Harbor perspectives in medicine · 2018
    Review
  17. Hepatitis A Virus Genome Organization and Replication Strategy.Cold Spring Harbor perspectives in medicine · 2018
    Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Jie-mei YuNational Institute for Viral Disease Control and Prevention, China CDC, Beijing, China.
Li-li LiNational Institute for Viral Disease Control and Prevention, China CDC, Beijing, China.
Cui-yuan ZhangNational Institute for Viral Disease Control and Prevention, China CDC, Beijing, China.
Shan LuNational Institute for Communicable Disease Control and Prevention, China CDC, Beijing, China.
Yuan-yun AoNational Institute for Viral Disease Control and Prevention, China CDC, Beijing, China.
Han-chun GaoNational Institute for Viral Disease Control and Prevention, China CDC, Beijing, China.
Zhi-ping XieNational Institute for Viral Disease Control and Prevention, China CDC, Beijing, China.
Guang-cheng XieNational Institute for Viral Disease Control and Prevention, China CDC, Beijing, China.
Xiao-man SunNational Institute for Viral Disease Control and Prevention, China CDC, Beijing, China.
Li-li PangNational Institute for Viral Disease Control and Prevention, China CDC, Beijing, China.
Jian-guo XuNational Institute for Communicable Disease Control and Prevention, China CDC, Beijing, China.
W Ian LipkinCenter for Infection and Immunity, Columbia University, New York, NY, USA.
Zhao-Jun DuanNational Institute for Viral Disease Control and Prevention, China CDC, Beijing, China.
National Institute for Viral Disease Control and Prevention · CNChinese Center For Disease Control and Prevention · CNColumbia University · USNational Institute for Communicable Disease Control and Prevention · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hepatitis A virus (HAV) is a hepatotropic picornavirus that causes acute liver disease worldwide. Here, we report on the identification of a novel hepatovirus tentatively named Marmota Himalayana hepatovirus (MHHAV) in wild woodchucks (Marmota Himalayana) in China. The genomic and molecular characterization of MHHAV indicated that it is most closely related genetically to HAV. MHHAV has wide tissue distribution but shows tropism for the liver. The virus is morphologically and structurally similar to HAV. The pattern of its codon usage bias is also consistent with that of HAV. Phylogenetic analysis indicated that MHHAV groups with known HAVs but forms an independent branch, and represents a new species in the genus Hepatovirus within the family Picornaviridae. Antigenic site analysis suggested MHHAV has a new antigenic property to other HAVs. Further evolutionary analysis of MHHAV and primate HAVs led to a most recent common ancestor estimate of 1,000 years ago, while the common ancestor of all HAV-related viruses including phopivirus can be traced back to 1800 years ago. The discovery of MHHAV may provide new insights into the origin and evolution of HAV and a model system with which to explore the pathogenesis of HAV infection.

Indexed as

AnimalsAntigens, ViralBase CompositionBayes TheoremCodonEpitopesEvolution, MolecularGenome, ViralGenomicsGenotypeHepatovirusMarmotaNucleic Acid ConformationOpen Reading FramesPhylogenyRNA, ViralAntigens, ViralCodonEpitopesRNA, Viral

Identifiers

PMID26924426
PMCPMC4770319
OpenAlexW2315268777

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.