Evidence map›Paper›PMID 26922638›Full record

ArticleBMC structural biology2016

Structures of EccB1 and EccD1 from the core complex of the mycobacterial ESX-1 type VII secretion system.

Jonathan M Wagner, Sum Chan, Timothy J Evans, Sara Kahng, Jennifer Kim, Mark A Arbing, David Eisenberg, Konstantin V Korotkov

Open access · hybridAbstract read
In one paragraph

Article in BMC structural biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Modeling Tubercular ESX-1 Secretion Using Mycobacterium marinum.Microbiology and molecular biology reviews : MMBR · 2020
    Review
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Functional analysis of the EsaB component of theMicrobiology (Reading, England) · 2017
    Article
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Jonathan M WagnerDepartment of Molecular & Cellular Biochemistry and Center for Structural Biology, University of Kentucky, 741 South Limestone, Lexington, KY, 40536, USA. jonw7782@gmail.com.
Sum ChanUCLA-DOE Institute, University of California Los Angeles, Los Angeles, CA, 90095-1570, USA. sumchan@mbi.ucla.edu.
Timothy J EvansDepartment of Molecular & Cellular Biochemistry and Center for Structural Biology, University of Kentucky, 741 South Limestone, Lexington, KY, 40536, USA. tj.evans@uky.edu.
Sara KahngUCLA-DOE Institute, University of California Los Angeles, Los Angeles, CA, 90095-1570, USA. sarakahng@gmail.com.
Jennifer KimUCLA-DOE Institute, University of California Los Angeles, Los Angeles, CA, 90095-1570, USA. jenniferkim1224@gmail.com.
Mark A ArbingUCLA-DOE Institute, University of California Los Angeles, Los Angeles, CA, 90095-1570, USA. marbing@mbi.ucla.edu.
David EisenbergUCLA-DOE Institute, Departments of Biological Chemistry and Chemistry & Biochemistry, and Howard Hughes Medical Institute, University of California Los Angeles, Los Angeles, CA, 90095-1570, USA. david@mbi.ucla.edu.
Konstantin V KorotkovDepartment of Molecular & Cellular Biochemistry and Center for Structural Biology, University of Kentucky, 741 South Limestone, Lexington, KY, 40536, USA. kkorotkov@uky.edu.
University of California, Los Angeles · USUniversity of Kentucky · US

Funding

Vulnerabilities in Mycobacterial Cell-Wall BiogenesisP01AI095208 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI SACCHETTINI, JAMES C · 2012 to 2022
$19.8M
The Cloning Protein Production, Crystallization, and X-ray Data Collection CoreP01AI068135 · NIAID · TEXAS A&M AGRILIFE RESEARCH · PI ALBER, THOMAS C · 2006 to 2010
$13.2M
Protein CoreP30GM110787 · NIGMS · UNIVERSITY OF KENTUCKY · PI WHITEHEART, SIDNEY WALDO · 2014 to 2018
$5.7M
Center for Biomedical Research Excellence in the Molecular Basis of Human DiseaseP20GM103486 · NIGMS · UNIVERSITY OF KENTUCKY · PI LOUIS HERSH, LOUIS HERSH LOUIS HERSH · 2012 to 2013
$4.2M
Structure and mechanism of the ESX secretion system from pathogenic mycobacteriaR01AI119022 · NIAID · UNIVERSITY OF KENTUCKY · PI KOROTKOV, KONSTANTIN V · 2015 to 2019
$1.7M
Howard Hughes Medical InstituteNIAID NIH HHS P01 AI068135NIAID NIH HHS P01 AI095208NIAID NIH HHS R01 AI119022NIAID NIH HHS R01AI119022NIGMS NIH HHS P20 GM103486NIGMS NIH HHS P20GM103486NIGMS NIH HHS P30 GM110787NIGMS NIH HHS P30GM110787
6 · The paper itself

Abstract

backgroundThe ESX-1 type VII secretion system is an important determinant of virulence in pathogenic mycobacteria, including Mycobacterium tuberculosis. This complicated molecular machine secretes folded proteins through the mycobacterial cell envelope to subvert the host immune response. Despite its important role in disease very little is known about the molecular architecture of the ESX-1 secretion system.

resultsThis study characterizes the structures of the soluble domains of two conserved core ESX-1 components - EccB1 and EccD1. The periplasmic domain of EccB1 consists of 4 repeat domains and a central domain, which together form a quasi 2-fold symmetrical structure. The repeat domains of EccB1 are structurally similar to a known peptidoglycan binding protein suggesting a role in anchoring the ESX-1 system within the periplasmic space. The cytoplasmic domain of EccD1has a ubiquitin-like fold and forms a dimer with a negatively charged groove.

conclusionsThese structures represent a major step towards resolving the molecular architecture of the entire ESX-1 assembly and may contribute to ESX-1 targeted tuberculosis intervention strategies.

Indexed as

Amino Acid SequenceAntigens, BacterialBacterial ProteinsConserved SequenceCrystallography, X-RayMolecular Sequence DataMycobacterium tuberculosisProtein ConformationProtein Structure, TertiarySequence AlignmentAntigens, BacterialBacterial ProteinsESAT-6 protein, Mycobacterium tuberculosis

Identifiers

PMID26922638
PMCPMC4769845
OpenAlexW2283142084

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.