Evidence map›Paper›PMID 26921345›Full record

ArticleJournal of leukocyte biology2016

Hepatitis C virus-cross-reactive TCR gene-modified T cells: a model for immunotherapy against diseases with genomic instability.

Timothy T Spear, Timothy P Riley, Gretchen E Lyons, Glenda G Callender, Jeffrey J Roszkowski, Yuan Wang, Patricia E Simms, Gina M Scurti, Kendra C Foley, David C Murray and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of leukocyte biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Frontiers in microbiology · 2024
    Article
  3. Article
  4. Article
  5. Review
  6. Improving T Cell Receptor On-Target Specificity via Structure-Guided Design.Molecular therapy : the journal of the American Society of Gene Therapy · 2019
    Article
  7. Article
  8. Article
  9. Altered Peptide Ligands Impact the Diversity of Polyfunctional Phenotypes in T Cell Receptor Gene-Modified T Cells.Molecular therapy : the journal of the American Society of Gene Therapy · 2018
    Article
  10. Article
  11. Article
  12. How an alloreactive T-cell receptor achieves peptide and MHC specificity.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  13. Article
  14. Strategies to genetically engineer T cells for cancer immunotherapy.Cancer immunology, immunotherapy : CII · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 1 country.

Timothy T SpearDepartment of Surgery, Cardinal Bernardin Cancer Center, Loyola University Chicago, Maywood, Illinois, USA; tspear@luc.edu.
Timothy P RileyDepartment of Chemistry and Biochemistry and the Harper Cancer Research Institute, University of Notre Dame, Notre Dame, Indiana, USA;
Gretchen E LyonsDepartment of Surgery, University of Chicago, Chicago, Illinois, USA; Department of Biology, Northeastern Illinois University, Chicago, Illinois, USA;
Glenda G CallenderDepartment of Surgery, University of Chicago, Chicago, Illinois, USA; Department of Surgery, Yale University School of Medicine, New Haven, Connecticut, USA;
Jeffrey J RoszkowskiDepartment of Surgery, University of Chicago, Chicago, Illinois, USA;
Yuan WangDepartment of Chemistry and Biochemistry and the Harper Cancer Research Institute, University of Notre Dame, Notre Dame, Indiana, USA;
Patricia E SimmsFlow Cytometry Core Facility, Cardinal Bernardin Cancer Center, Loyola University Chicago, Maywood, Illinois, USA;
Gina M ScurtiDepartment of Surgery, Cardinal Bernardin Cancer Center, Loyola University Chicago, Maywood, Illinois, USA;
Kendra C FoleyDepartment of Surgery, Cardinal Bernardin Cancer Center, Loyola University Chicago, Maywood, Illinois, USA;
David C MurrayDepartment of Surgery, Cardinal Bernardin Cancer Center, Loyola University Chicago, Maywood, Illinois, USA;
Lance M HellmanDepartment of Chemistry and Biochemistry and the Harper Cancer Research Institute, University of Notre Dame, Notre Dame, Indiana, USA;
Rachel H McMahanDivision of Gastroenterology and Hepatology, Hepatitis C Center, and Department of Medicine, University of Colorado Health Sciences Center, Aurora, Colorado, USA; and.
Makio IwashimaDepartment of Microbiology and Immunology, Loyola University Chicago, Maywood, Illinois, USA;
Elizabeth Garrett-MayerDepartment of Public Health Sciences, Medical University of South Carolina, Charleston, South Carolina, USA Hollings Cancer Center, Medical University of South Carolina, Charleston, South Carolina, USA.
Hugo R RosenDivision of Gastroenterology and Hepatology, Hepatitis C Center, and Department of Medicine, University of Colorado Health Sciences Center, Aurora, Colorado, USA; and.
Brian M BakerDepartment of Chemistry and Biochemistry and the Harper Cancer Research Institute, University of Notre Dame, Notre Dame, Indiana, USA;
Michael I NishimuraDepartment of Surgery, Cardinal Bernardin Cancer Center, Loyola University Chicago, Maywood, Illinois, USA; Department of Surgery, University of Chicago, Chicago, Illinois, USA;
Loyola University Chicago · USUniversity of Chicago · USUniversity of Notre Dame · USUniversity of Colorado Anschutz Medical Campus · USMedical University of South Carolina · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Indiana Clinical and Translational Sciences InstituteUL1TR001108 · NCATS · INDIANA UNIVERSITY INDIANAPOLIS · PI DENNE, SCOTT C., SHEKHAR, ANANTHA · 2013 to 2017
$23.3M
TCR TRANSDUCED CDB T CELLS FOR ADOPTIVE IMMUNOTHERAPYP01CA154778 · NCI · LOYOLA UNIVERSITY CHICAGO · PI NISHIMURA, MICHAEL I. · 2011 to 2015
$15.4M
Structural biophysics and molecular design in cellular immunityR35GM118166 · NIGMS · UNIVERSITY OF NOTRE DAME · PI BAKER, BRIAN M · 2016 to 2025
$4.4M
Physical Basis for T Cell Receptor Binding and ActivityR01GM067079 · NIGMS · UNIVERSITY OF NOTRE DAME · PI BAKER, BRIAN M · 2003 to 2015
$3.5M
TCR Affinity and Therapeutic Efficacy of T CellsR01CA104947 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI NISHIMURA, MICHAEL I. · 2007 to 2011
$1.9M
INNATE AND ADAPTIVE IMMUNITY TO HCV IN HUMAN PREGNANCYR01HD075549 · NICHD · UNIVERSITY OF SOUTHERN CALIFORNIA · PI ROSEN, HUGO RAMON · 2014 to 2018
$1.6M
Animal Model for Her-2/neu Specific TCR Gene TransferR01CA102280 · NCI · UNIVERSITY OF CHICAGO · PI NISHIMURA, MICHAEL I · 2003 to 2007
$1.4M
Tumor Recognition by TCR Transduced CD4+ and CD8+T CellsR01CA090873 · NCI · UNIVERSITY OF CHICAGO · PI NISHIMURA, MICHAEL I · 2001 to 2004
$1.3M
Development of a Computational Framework for TCR EngineeringR01GM103773 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI BAKER, BRIAN M, WENG, ZHIPING · 2013 to 2016
$1.2M
HEPATITIS C VIRAL INFECTION IN HUMAN PREGNANCYR56AI100991 · NIAID · UNIVERSITY OF COLORADO DENVER · PI ROSEN, HUGO RAMON · 2012 to 2012
$532k
Hepatitis C viral sensing by non-parenchymal liver cells (NPC)R21AI103361 · NIAID · UNIVERSITY OF COLORADO DENVER · PI ROSEN, HUGO RAMON · 2013 to 2014
$411k
NCATS NIH HHS UL1 TR001108NCATS NIH HHS UL1 TR001863NCI NIH HHS F30 CA180731NCI NIH HHS P01 CA154778NCI NIH HHS R01 CA090873NCI NIH HHS R01 CA102280NCI NIH HHS R01 CA104947NCI NIH HHS R21 CA153789NIAID NIH HHS R21 AI103361NIAID NIH HHS R56 AI100991NICHD NIH HHS R01 HD075549NIGMS NIH HHS R01 GM067079NIGMS NIH HHS R01 GM103773NIGMS NIH HHS R35 GM118166
6 · The paper itself

Abstract

A major obstacle hindering the development of effective immunity against viral infections, their associated disease, and certain cancers is their inherent genomic instability. Accumulation of mutations can alter processing and presentation of antigens recognized by antibodies and T cells that can lead to immune escape variants. Use of an agent that can intrinsically combat rapidly mutating viral or cancer-associated antigens would be quite advantageous in developing effective immunity against such disease. We propose that T cells harboring cross-reactive TCRs could serve as a therapeutic agent in these instances. With the use of hepatitis C virus, known for its genomic instability as a model for mutated antigen recognition, we demonstrate cross-reactivity against immunogenic and mutagenic nonstructural protein 3:1406-1415 and nonstructural protein 3:1073-1081 epitopes in PBL-derived, TCR-gene-modified T cells. These single TCR-engineered T cells can CD8-independently recognize naturally occurring and epidemiologically relevant mutant variants. TCR-peptide MHC modeling data allow us to rationalize how TCR structural properties accommodate recognition of certain mutated epitopes and how these substitutions impact the requirement of CD8 affinity enhancement for recognition. A better understanding of such TCRs' promiscuous behavior may allow for exploitation of these properties to develop novel, adoptive T cell-based therapies for viral infections and cancers exhibiting similar genomic instability.

Indexed as

Genomic InstabilityImmunotherapyAntigens, ViralCD8-Positive T-LymphocytesCross ReactionsEpitopes, T-LymphocyteHepacivirusHepatitis CHistocompatibility Antigens Class IHumansReceptors, Antigen, T-CellAntigens, ViralEpitopes, T-LymphocyteHistocompatibility Antigens Class IReceptors, Antigen, T-Cellaltered peptide ligandscomputational modelingpeptide-MHC

Identifiers

PMID26921345
PMCPMC4982612
OpenAlexW2277949761

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.