Evidence map›Paper›PMID 26921294›Full record

ArticleG3 (Bethesda, Md.)2016

Sequence of the Gonium pectorale Mating Locus Reveals a Complex and Dynamic History of Changes in Volvocine Algal Mating Haplotypes.

Takashi Hamaji, Yuko Mogi, Patrick J Ferris, Toshiyuki Mori, Shinya Miyagishima, Yukihiro Kabeya, Yoshiki Nishimura, Atsushi Toyoda, Hideki Noguchi, Asao Fujiyama and 5 more

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Three genomes in the algal genusProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  11. UV Chromosomes and Haploid Sexual Systems.Trends in plant science · 2018
    Review
  12. Evolutionary divergence of the sex-determining geneDevelopment (Cambridge, England) · 2018
    Article
  13. Article
  14. Article
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 2 countries.

Takashi HamajiDonald Danforth Plant Science Center, St Louis, Missouri 63132 thamaji@danforthcenter.org.ORCID 0000-0002-2801-2148
Yuko MogiDepartment of Biological Sciences, Graduate School of Science, University of Tokyo 113-0033, Japan.
Patrick J FerrisDepartment of Ecology and Evolutionary Biology, University of Arizona, Tucson, Arizona 85721.
Toshiyuki MoriDepartment of Biological Sciences, Graduate School of Science, University of Tokyo 113-0033, Japan.
Shinya MiyagishimaSymbiosis and Cell Evolution Laboratory and Comparative Genomics Laboratory, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.
Yukihiro KabeyaSymbiosis and Cell Evolution Laboratory and Comparative Genomics Laboratory, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.ORCID 0000-0001-6328-0765
Yoshiki NishimuraSymbiosis and Cell Evolution Laboratory and Comparative Genomics Laboratory, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.
Atsushi ToyodaDepartment of Botany, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan.
Hideki NoguchiDepartment of Botany, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan.
Asao FujiyamaDepartment of Botany, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan.
Bradley J S C OlsonDivision of Biology, Kansas State University, Manhattan, Kansas 66506.
Tara N MarriageDivision of Biology, Kansas State University, Manhattan, Kansas 66506.
Ichiro NishiiDepartment of Chemistry, Biology, and Environmental Sciences, Faculty of Science, Nara Women's University, Nara 630-8506, Japan.ORCID 0000-0003-0045-1525
James G UmenDonald Danforth Plant Science Center, St Louis, Missouri 63132.ORCID 0000-0003-4094-9045
Hisayoshi NozakiDepartment of Biological Sciences, Graduate School of Science, University of Tokyo 113-0033, Japan.
Kyoto University · JPNational Institute of Genetics · JPTokyo University of Science · JPDonald Danforth Plant Science Center · USKansas State University · USNara Women's University · JPUniversity of Arizona · US

Funding

Evolution of Sexually Dimorphic Germ Cells in Volvox carteriR01GM078376 · NIGMS · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI UMEN, JAMES GREG · 2006 to 2014
$3.3M
NIGMS NIH HHS R01 GM078376
6 · The paper itself

Abstract

Sex-determining regions (SDRs) or mating-type (MT) loci in two sequenced volvocine algal species, Chlamydomonas reinhardtii and Volvox carteri, exhibit major differences in size, structure, gene content, and gametolog differentiation. Understanding the origin of these differences requires investigation of MT loci from related species. Here, we determined the sequences of the minus and plus MT haplotypes of the isogamous 16-celled volvocine alga, Gonium pectorale, which is more closely related to the multicellular V. carteri than to C. reinhardtii Compared to C. reinhardtii MT, G. pectorale MT is moderately larger in size, and has a less complex structure, with only two major syntenic blocs of collinear gametologs. However, the gametolog content of G. pectorale MT has more overlap with that of V. carteri MT than with C. reinhardtii MT, while the allelic divergence between gametologs in G. pectorale is even lower than that in C. reinhardtii Three key sex-related genes are conserved in G. pectorale MT: GpMID and GpMTD1 in MT-, and GpFUS1 in MT+. GpFUS1 protein exhibited specific localization at the plus-gametic mating structure, indicating a conserved function in fertilization. Our results suggest that the G. pectorale-V. carteri common ancestral MT experienced at least one major reformation after the split from C. reinhardtii, and that the V. carteri ancestral MT underwent a subsequent expansion and loss of recombination after the divergence from G. pectorale These data begin to polarize important changes that occurred in volvocine MT loci, and highlight the potential for discontinuous and dynamic evolution in SDRs.

Indexed as

HaplotypesQuantitative Trait LociChromosome WalkingComputational BiologyEvolution, MolecularGene ExpressionGenetic LinkageGenome, PlantGenomicsHigh-Throughput Nucleotide SequencingPhylogenyReproductionSex Determination ProcessesVolvoxChlamydomonasevolutionGenetics of SexGoniummating locusVolvox

Identifiers

PMID26921294
PMCPMC4856071
OpenAlexW2288726669

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.