Evidence map›Paper›PMID 26921073›Full record

ArticleChromosoma2017

Chromosomal aneuploidies induced upon Lamin B2 depletion are mislocalized in the interphase nucleus.

Devika Ranade, Shivsmriti Koul, Joyce Thompson, Kumar Brajesh Prasad, Kundan Sengupta

Open access · hybridAbstract read
In one paragraph

Article in Chromosoma, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
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  9. Article
  10. Review
  11. Article
  12. Nucleus-Cytoskeleton Crosstalk During Mitotic Entry.Frontiers in cell and developmental biology · 2021
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. From Human Cytogenetics to Human Chromosomics.International journal of molecular sciences · 2019
    Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Devika RanadeBiology, Indian Institute of Science Education and Research, Pune, Main Building, Homi Bhabha Road, Pashan, Pune, Maharashtra, 411008, India.
Shivsmriti KoulBiology, Indian Institute of Science Education and Research, Pune, Main Building, Homi Bhabha Road, Pashan, Pune, Maharashtra, 411008, India.
Joyce ThompsonBiology, Indian Institute of Science Education and Research, Pune, Main Building, Homi Bhabha Road, Pashan, Pune, Maharashtra, 411008, India.
Kumar Brajesh PrasadBiology, Indian Institute of Science Education and Research, Pune, Main Building, Homi Bhabha Road, Pashan, Pune, Maharashtra, 411008, India.
Kundan SenguptaBiology, Indian Institute of Science Education and Research, Pune, Main Building, Homi Bhabha Road, Pashan, Pune, Maharashtra, 411008, India. kunsen@iiserpune.ac.in.
Indian Institute of Science Education and Research Pune · IN

Funding

DBT-Wellcome Trust India Alliance 500164-Z-09-ZWellcome Trust
6 · The paper itself

Abstract

Chromosome territories assume non-random positions in the interphase nucleus with gene-rich chromosomes localized toward the nuclear interior and gene-poor chromosome territories toward the nuclear periphery. Lamins are intermediate filament proteins of the inner nuclear membrane required for the maintenance of nuclear structure and function. Here, we show using whole-genome expression profiling that Lamin A/C or Lamin B2 depletion in an otherwise diploid colorectal cancer cell line (DLD1) deregulates transcript levels from specific chromosomes. Further, three-dimensional fluorescence in situ hybridization (3D-FISH) analyses of a subset of these transcriptionally deregulated chromosome territories revealed that the diploid chromosome territories in Lamin-depleted cells largely maintain conserved positions in the interphase nucleus in a gene-density-dependent manner. In addition, chromosomal aneuploidies were induced in ~25 % of Lamin A/C or Lamin B2-depleted cells. Sub-populations of these aneuploid cells consistently showed a mislocalization of the gene-rich aneuploid chromosome 19 territory toward the nuclear periphery, while gene-poor aneuploid chromosome 18 territory was mislocalized toward the nuclear interior predominantly upon Lamin B2 than Lamin A/C depletion. In addition, a candidate gene locus ZNF570 (Chr.19q13.12) significantly overexpressed upon Lamin B2 depletion was remarkably repositioned away from the nuclear lamina. Taken together, our studies strongly implicate an overarching role for Lamin B2 in the maintenance of nuclear architecture since loss of Lamin B2 relieves the spatial positional constraints required for maintaining conserved localization of aneuploid chromosome territories in the interphase nucleus.

Indexed as

AneuploidyActive Transport, Cell NucleusCell Line, TumorCell NucleusDiploidyGene Expression RegulationGene Knockdown TechniquesHumansInterphaseLamin Type ALamin Type BRNA InterferenceRNA, Small InterferingTranscription, GeneticLamin Type ALamin Type BRNA, Small InterferingAneuploidyCancer cellsChromosome positioningChromosome territoriesLaminsNucleusTranscription

Identifiers

PMID26921073
PMCPMC5371638
OpenAlexW2289426061

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.