Evidence map›Paper›PMID 26920134›Full record

ArticleBMC plant biology2016

Fusarium oxysporum f.sp. radicis-lycopersici induces distinct transcriptome reprogramming in resistant and susceptible isogenic tomato lines.

Daniele Manzo, Francesca Ferriello, Gerardo Puopolo, Astolfo Zoina, Daniela D'Esposito, Luca Tardella, Alberto Ferrarini, Maria Raffaella Ercolano

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
8.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 63 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Daniele ManzoDepartment of Agriculture Sciences, University of Naples 'Federico II', Via Università, 100, 80055, Portici, Italy. danielemanzo88@gmail.com.
Francesca FerrielloDepartment of Agriculture Sciences, University of Naples 'Federico II', Via Università, 100, 80055, Portici, Italy. francesca.ferriello@unina.it.
Gerardo PuopoloDepartment of Agriculture Sciences, University of Naples 'Federico II', Via Università, 100, 80055, Portici, Italy. gerardo.puopolo@fmach.it.
Astolfo ZoinaDepartment of Agriculture Sciences, University of Naples 'Federico II', Via Università, 100, 80055, Portici, Italy. zoina@unina.it.
Daniela D'EspositoDepartment of Agriculture Sciences, University of Naples 'Federico II', Via Università, 100, 80055, Portici, Italy. danieladesposito@hotmail.it.
Luca TardellaDepartment of Statistical Sciences, University of Rome 'La Sapienza', Rome, Italy. luca.tardella@uniroma1.it.
Alberto FerrariniDipartimento di Biotecnologie, Università degli Studi di Verona, Strada le Grazie, Verona, Italy. alberto.ferrarini@univr.it.
Maria Raffaella ErcolanoDepartment of Agriculture Sciences, University of Naples 'Federico II', Via Università, 100, 80055, Portici, Italy. ercolano@unina.it.
University of Naples Federico II · ITSapienza University of Rome · ITUniversity of Verona · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundFusarium oxysporum f.sp. radicis-lycopersici (FORL) is one of the most destructive necrotrophic pathogens affecting tomato crops, causing considerable field and greenhouse yield losses. Despite such major economic impact, little is known about the molecular mechanisms regulating Fusarium oxysporum f.sp. radicis-lycopersici resistance in tomato.

resultsA transcriptomic experiment was carried out in order to investigate the main mechanisms of FORL response in resistant and susceptible isogenic tomato lines. Microarray analysis at 15 DPI (days post inoculum) revealed a distinct gene expression pattern between the two genotypes in the inoculated vs non-inoculated conditions. A model of plant response both for compatible and incompatible reactions was proposed. In particular, in the incompatible interaction an activation of defense genes related to secondary metabolite production and tryptophan metabolism was observed. Moreover, maintenance of the cell osmotic potential after the FORL challenging was mediated by a dehydration-induced protein. As for the compatible interaction, activation of an oxidative burst mediated by peroxidases and a cytochrome monooxygenase induced cell degeneration and necrosis.

conclusionsOur work allowed comprehensive understanding of the molecular basis of the tomato-FORL interaction. The result obtained emphasizes a different transcriptional reaction between the resistant and the susceptible genotype to the FORL challenge. Our findings could lead to the improvement in disease control strategies.

Indexed as

FusariumGene Expression ProfilingGenome, PlantPlant DiseasesSolanum lycopersicumTranscriptome

Identifiers

PMID26920134
PMCPMC4769521
OpenAlexW2284592284

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.