Evidence map›Paper›PMID 26918378›Full record

ArticlePloS one2016

Genome-Wide Identification of Mitogen-Activated Protein Kinase Gene Family across Fungal Lineage Shows Presence of Novel and Diverse Activation Loop Motifs.

Tapan Kumar Mohanta, Nibedita Mohanta, Pratap Parida, Sujogya Kumar Panda, Lakshmi Narayanan Ponpandian, Hanhong Bae

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

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  5. HJournal of fungi (Basel, Switzerland) · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Tapan Kumar MohantaFree Major of Natural Science, College of Basic Studies, Yeungnam University, Gyeongsan, Gyeongsangbuk-do, 712749, Republic of Korea.
Nibedita MohantaDepartment Of Biotechnology, North Orissa University, Takatpur, Baripada, 757003, India.
Pratap ParidaRegional Medical Research Centre, NE Region, Indian Council of Medical Research, Dibrugarh, 786001, Assam, India.
Sujogya Kumar PandaDepartment of Zoology; North Orissa University; Baripada, Odisha, 757003, India.
Lakshmi Narayanan PonpandianSchool of Biotechnology, Yeungnam University, Gyeongsan, Gyeongsangbuk-do, 712749, Republic of Korea.
Hanhong BaeSchool of Biotechnology, Yeungnam University, Gyeongsan, Gyeongsangbuk-do, 712749, Republic of Korea.
Yeungnam University · KRMaharaja Sriram Chandra Bhanja Deo University · INRegional Medical Research Centre · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mitogen-activated protein kinase (MAPK) is characterized by the presence of the T-E-Y, T-D-Y, and T-G-Y motifs in its activation loop region and plays a significant role in regulating diverse cellular responses in eukaryotic organisms. Availability of large-scale genome data in the fungal kingdom encouraged us to identify and analyse the fungal MAPK gene family consisting of 173 fungal species. The analysis of the MAPK gene family resulted in the discovery of several novel activation loop motifs (T-T-Y, T-I-Y, T-N-Y, T-H-Y, T-S-Y, K-G-Y, T-Q-Y, S-E-Y and S-D-Y) in fungal MAPKs. The phylogenetic analysis suggests that fungal MAPKs are non-polymorphic, had evolved from their common ancestors around 1500 million years ago, and are distantly related to plant MAPKs. We are the first to report the presence of nine novel activation loop motifs in fungal MAPKs. The specificity of the activation loop motif plays a significant role in controlling different growth and stress related pathways in fungi. Hence, the presences of these nine novel activation loop motifs in fungi are of special interest.

Indexed as

Genes, FungalAmino Acid MotifsEnzyme ActivationFungal ProteinsFungiGenetic VariationMitogen-Activated Protein KinasesModels, MolecularPhylogenyProtein Structure, TertiarySequence AlignmentSequence Analysis, ProteinStramenopilesFungal ProteinsMitogen-Activated Protein Kinases

Identifiers

PMID26918378
PMCPMC4769017
OpenAlexW2282758433

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.