Evidence map›Paper›PMID 26917774›Full record

ArticleScience (New York, N.Y.)2016

Direct CRISPR spacer acquisition from RNA by a natural reverse transcriptase-Cas1 fusion protein.

Sukrit Silas, Georg Mohr, David J Sidote, Laura M Markham, Antonio Sanchez-Amat, Devaki Bhaya, Alan M Lambowitz, Andrew Z Fire

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 126 papers.

0numbers the graph read from it
0cells of the map it votes in
126citing papers in PubMed
14.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

126 citing papers in PubMed, 214 citations in OpenAlex.

  1. Article
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  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. CRISPR-Cas Systems: A Functional Perspective and Innovations.International journal of molecular sciences · 2025
    Review
  13. Article
  14. Review
  15. Prokaryotic homeostasis - a solution to thrive and survive.Frontiers in molecular biosciences · 2025
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

66 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Sukrit Silas *Department of Pathology, Stanford University, Stanford CA 94305, USA.
Georg Mohr *Institute for Cellular and Molecular Biology, Department of Molecular Biosciences, University of Texas at Austin, Austin TX 78712, USA.
David J SidoteInstitute for Cellular and Molecular Biology, Department of Molecular Biosciences, University of Texas at Austin, Austin TX 78712, USA.
Laura M MarkhamInstitute for Cellular and Molecular Biology, Department of Molecular Biosciences, University of Texas at Austin, Austin TX 78712, USA.
Antonio Sanchez-AmatDepartment of Genetics and Microbiology, Universidad de Murcia, Murcia 30100, Spain.
Devaki BhayaDepartment of Plant Biology, Carnegie Institution for Science, Stanford CA 94305, USA.
Alan M LambowitzInstitute for Cellular and Molecular Biology, Department of Molecular Biosciences, University of Texas at Austin, Austin TX 78712, USA.
Andrew Z FireDepartment of Pathology, Stanford University, Stanford CA 94305, USA.
Stanford University · USCarnegie Institution for Science · USUniversidad de Murcia · ES

Funding

GENE REGULATION DURING EARLY DEVELOPMENT OF C. ELEGANSR01GM037706 · NIGMS · STANFORD UNIVERSITY · PI FIRE, ANDREW Z. · 1987 to 2018
$11.0M
RETROPLASMID AND GROUP II INTRON REVERSE TRANSCRIPTASESR01GM037949 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI LAMBOWITZ, ALAN M. · 1986 to 2019
$8.6M
RNA SPLICING IN NEUROSPORA MITOCHONDRIAR01GM037951 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI LAMBOWITZ, ALAN M. · 1986 to 2016
$6.6M
INVOLVEMENT OF PROTEINS IN SPLICING GROUP I INTRONSR37GM037951 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI LAMBOWITZ, ALAN M. · 1993 to 2002
$1.2M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM037706NIGMS NIH HHS R01 GM037949NIGMS NIH HHS R01 GM037951NIGMS NIH HHS R01-GM37706NIGMS NIH HHS R01-GM37949NIGMS NIH HHS R01-GM37951NIGMS NIH HHS R37 GM037951
6 · The paper itself

Abstract

CRISPR systems mediate adaptive immunity in diverse prokaryotes. CRISPR-associated Cas1 and Cas2 proteins have been shown to enable adaptation to new threats in type I and II CRISPR systems by the acquisition of short segments of DNA (spacers) from invasive elements. In several type III CRISPR systems, Cas1 is naturally fused to a reverse transcriptase (RT). In the marine bacterium Marinomonas mediterranea (MMB-1), we showed that a RT-Cas1 fusion protein enables the acquisition of RNA spacers in vivo in a RT-dependent manner. In vitro, the MMB-1 RT-Cas1 and Cas2 proteins catalyze the ligation of RNA segments into the CRISPR array, which is followed by reverse transcription. These observations outline a host-mediated mechanism for reverse information flow from RNA to DNA.

Indexed as

Clustered Regularly Interspaced Short Palindromic RepeatsCRISPR-Cas SystemsBacterial ProteinsBase SequenceCRISPR-Associated ProteinsDNAIntronsMarinomonasMolecular Sequence DataMutant Chimeric ProteinsPhylogenyProtein Structure, TertiaryRNARNA-Directed DNA PolymeraseRNA SplicingBacterial ProteinsCRISPR-Associated ProteinsDNAMutant Chimeric ProteinsRNARNA-Directed DNA Polymerase

Identifiers

PMID26917774
PMCPMC4898656
OpenAlexW2288272959

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.