Evidence map›Paper›PMID 26916285›Full record

ArticleMolecular therapy : the journal of the American Society of Gene Therapy2016

Precise Correction of Disease Mutations in Induced Pluripotent Stem Cells Derived From Patients With Limb Girdle Muscular Dystrophy.

Soeren Turan, Alfonso P Farruggio, Waracharee Srifa, John W Day, Michele P Calos

Open access · bronzeAbstract read
In one paragraph

Article in Molecular therapy : the journal of the American Society of Gene Therapy, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed, 1 pooled it
8.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 1 synthesis or guideline pooled it, 87 citations in OpenAlex.

  1. Pooled it
  2. Experimental and therapeutic medicine · 2026
    Article
  3. Review
  4. In Vitro Correction of Point Mutations in theInternational journal of molecular sciences · 2025
    Article
  5. Current clinical applications of AAV-mediated gene therapy.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Review
  6. Article
  7. Autism risk genes converge onbioRxiv : the preprint server for biology · 2025
    Article
  8. Review
  9. Review
  10. Review
  11. Review
  12. Review
  13. Article
  14. Review
  15. Article
  16. Review
  17. In Vitro Maturation of Human Pluripotent Stem Cell-Derived Myotubes.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  18. Article
  19. Stem Cell-Based Therapeutic Approaches in Genetic Diseases.Advances in experimental medicine and biology · 2023
    Article
  20. Current Strategies of Muscular Dystrophy Therapeutics: An Overview.Methods in molecular biology (Clifton, N.J.) · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Soeren TuranDepartment of Genetics, Stanford University School of Medicine, Stanford, California, USA.
Alfonso P FarruggioDepartment of Genetics, Stanford University School of Medicine, Stanford, California, USA.
Waracharee SrifaDepartment of Genetics, Stanford University School of Medicine, Stanford, California, USA.
John W DayDepartment of Neurology, Stanford University School of Medicine, Stanford, California, USA.
Michele P CalosDepartment of Genetics, Stanford University School of Medicine, Stanford, California, USA.
Stanford University · US

Funding

Modeling chromosome 7 loss in Myelodysplasia-iPSCsR01HL121570 · NHLBI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI PAPAPETROU, EIRINI · 2014 to 2018
$2.1M
Genetic correction of human beta-thalassemic induced pluripotent stem cellsR00DK087923 · NIDDK · UNIVERSITY OF WASHINGTON · PI PAPAPETROU, EIRINI · 2013 to 2015
$760k
NHLBI NIH HHS R01 HL121570NIDDK NIH HHS R00 DK087923
6 · The paper itself

Abstract

Limb girdle muscular dystrophies types 2B (LGMD2B) and 2D (LGMD2D) are degenerative muscle diseases caused by mutations in the dysferlin and alpha-sarcoglycan genes, respectively. Using patient-derived induced pluripotent stem cells (iPSC), we corrected the dysferlin nonsense mutation c.5713C>T; p.R1905X and the most common alpha-sarcoglycan mutation, missense c.229C>T; p.R77C, by single-stranded oligonucleotide-mediated gene editing, using the CRISPR/Cas9 gene-editing system to enhance the frequency of homology-directed repair. We demonstrated seamless, allele-specific correction at efficiencies of 0.7-1.5%. As an alternative, we also carried out precise gene addition strategies for correction of the LGMD2B iPSC by integration of wild-type dysferlin cDNA into the H11 safe harbor locus on chromosome 22, using dual integrase cassette exchange (DICE) or TALEN-assisted homologous recombination for insertion precise (THRIP). These methods employed TALENs and homologous recombination, and DICE also utilized site-specific recombinases. With DICE and THRIP, we obtained targeting efficiencies after selection of ~20%. We purified iPSC corrected by all methods and verified rescue of appropriate levels of dysferlin and alpha-sarcoglycan protein expression and correct localization, as shown by immunoblot and immunocytochemistry. In summary, we demonstrate for the first time precise correction of LGMD iPSC and validation of expression, opening the possibility of cell therapy utilizing these corrected iPSC.

Indexed as

MutationAllelesCell- and Tissue-Based TherapyCell LineCRISPR-Cas SystemsDysferlinFemaleGene EditingGenetic TherapyHomologous RecombinationHumansInduced Pluripotent Stem CellsMembrane ProteinsMuscle ProteinsMuscular Dystrophies, Limb-GirdleSarcoglycansDysferlinDYSF protein, humanMembrane ProteinsMuscle ProteinsSarcoglycans

Identifiers

PMID26916285
PMCPMC4886942
OpenAlexW2278995756

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.