Evidence map›Paper›PMID 26916109›Full record

ArticleGenome research2016

Transmission of human mtDNA heteroplasmy in the Genome of the Netherlands families: support for a variable-size bottleneck.

Mingkun Li, Rebecca Rothwell, Martijn Vermaat, Manja Wachsmuth, Roland Schröder, Jeroen F J Laros, Mannis van Oven, Paul I W de Bakker, Jasper A Bovenberg, Cornelia M van Duijn and 10 more

Open access · bronzeAbstract readTwin Study
In one paragraph

Article in Genome research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 102 citations in OpenAlex.

  1. Review
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  11. High-frequency and functional mitochondrial DNA mutations at the single-cell level.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  12. Precision mitochondrial medicine.Cambridge prisms. Precision medicine · 2023
    Review
  13. Sorting of mitochondrial and plastid heteroplasmy inProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  14. Article
  15. Mitochondrial DNA damage as driver of cellular outcomes.American journal of physiology. Cell physiology · 2022
    Review
  16. Article
  17. Article
  18. Review
  19. Review
  20. Mitochondrial Contributions to Hematopoietic Stem Cell Aging.International journal of molecular sciences · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 9 institutions in 4 countries.

Mingkun LiDepartment of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany; Fondation Mérieux, 69002 Lyon, France;
Rebecca RothwellDepartment of Biostatistics and Center for Statistical Genetics, University of Michigan, Ann Arbor, Michigan 48109, USA;
Martijn VermaatLeiden Genome Technology Center, Department of Human Genetics, Leiden University Medical Center, Leiden 2300 RC, The Netherlands;
Manja WachsmuthDepartment of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany;
Roland SchröderDepartment of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany;
Jeroen F J LarosLeiden Genome Technology Center, Department of Human Genetics, Leiden University Medical Center, Leiden 2300 RC, The Netherlands;
Mannis van OvenDepartment of Genetic Identification, Erasmus MC University Medical Center Rotterdam, Rotterdam 3000 CA, The Netherlands;
Paul I W de BakkerDepartment of Medical Genetics, Center for Molecular Medicine, University Medical Center Utrecht, Utrecht 3584 CG, The Netherlands; Department of Epidemiology, Julius Center for Health Sciences and Primary Care, University Medical Center Utrecht, Utrecht 3584 CG, The Netherlands;
Jasper A BovenbergDepartment of Biological Psychology, VU University Amsterdam, Amsterdam 1081 BT, The Netherlands;
Cornelia M van DuijnLegal Pathways Institute for Health and Bio Law, Aerdenhout 2111, The Netherlands;
Gert-Jan B van OmmenDepartment of Epidemiology, Erasmus MC University Medical Center Rotterdam, Rotterdam 3000 CA, The Netherlands;
P Eline SlagboomDepartment of Human Genetics, Leiden University Medical Center, Leiden 2300 RC, The Netherlands;
Morris A SwertzSection of Molecular Epidemiology, Department of Medical Statistics and Bioinformatics, Leiden University Medical Center, Leiden 2300 RC, The Netherlands; Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen 9700 RB, The Netherlands;
Cisca WijmengaSection of Molecular Epidemiology, Department of Medical Statistics and Bioinformatics, Leiden University Medical Center, Leiden 2300 RC, The Netherlands; Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen 9700 RB, The Netherlands;
Genome of Netherlands Consortium
Manfred KayserDepartment of Genetic Identification, Erasmus MC University Medical Center Rotterdam, Rotterdam 3000 CA, The Netherlands;
Dorret I BoomsmaGenomics Coordination Center, University Medical Center Groningen, University of Groningen, Groningen 9700 RB, The Netherlands;
Sebastian ZöllnerDepartment of Biostatistics and Center for Statistical Genetics, University of Michigan, Ann Arbor, Michigan 48109, USA; Department of Psychiatry, University of Michigan, Ann Arbor, Michigan 48109, USA.
Peter de KnijffDepartment of Human Genetics, Leiden University Medical Center, Leiden 2300 RC, The Netherlands;
Mark StonekingDepartment of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany;
Leiden University Medical Center · NLErasmus MC · NLMax Planck Institute for Evolutionary Anthropology · DEUniversity Medical Center Groningen · NLUniversity of Michigan · USAmsterdam University College · NLFondation Mérieux · FRNetherlands Center for Occupational Diseases · NLUniversity Medical Center Utrecht · NL

Funding

University of Michigan Training Program in Genomic ScienceT32HG000040 · NHGRI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Sebastian Zoellner · 1995 to 2026
$16.4M
European Research Council 230374NHGRI NIH HHS T32 HG000040
6 · The paper itself

Abstract

Although previous studies have documented a bottleneck in the transmission of mtDNA genomes from mothers to offspring, several aspects remain unclear, including the size and nature of the bottleneck. Here, we analyze the dynamics of mtDNA heteroplasmy transmission in the Genomes of the Netherlands (GoNL) data, which consists of complete mtDNA genome sequences from 228 trios, eight dizygotic (DZ) twin quartets, and 10 monozygotic (MZ) twin quartets. Using a minor allele frequency (MAF) threshold of 2%, we identified 189 heteroplasmies in the trio mothers, of which 59% were transmitted to offspring, and 159 heteroplasmies in the trio offspring, of which 70% were inherited from the mothers. MZ twin pairs exhibited greater similarity in MAF at heteroplasmic sites than DZ twin pairs, suggesting that the heteroplasmy MAF in the oocyte is the major determinant of the heteroplasmy MAF in the offspring. We used a likelihood method to estimate the effective number of mtDNA genomes transmitted to offspring under different bottleneck models; a variable bottleneck size model provided the best fit to the data, with an estimated mean of nine individual mtDNA genomes transmitted. We also found evidence for negative selection during transmission against novel heteroplasmies (in which the minor allele has never been observed in polymorphism data). These novel heteroplasmies are enhanced for tRNA and rRNA genes, and mutations associated with mtDNA diseases frequently occur in these genes. Our results thus suggest that the female germ line is able to recognize and select against deleterious heteroplasmies.

Indexed as

DNA, MitochondrialFamilyGenetic HeterogeneityInheritance PatternsAllelesFemaleGene FrequencyHumansMaleModels, GeneticModels, StatisticalMutationNetherlandsPolymorphism, GeneticSelection, GeneticTwinsDNA, Mitochondrial

Identifiers

PMID26916109
PMCPMC4817766
OpenAlexW2328583999

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.