Evidence map›Paper›PMID 26915022›Full record

ArticleJournal of chemical information and modeling2016

Identification of New Human Malaria Parasite Plasmodium falciparum Dihydroorotate Dehydrogenase Inhibitors by Pharmacophore and Structure-Based Virtual Screening.

Elumalai Pavadai, Farah El Mazouni, Sergio Wittlin, Carmen de Kock, Margaret A Phillips, Kelly Chibale

Abstract readValidation Study
In one paragraph

Article in Journal of chemical information and modeling, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
6.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 67 citations in OpenAlex.

  1. Review
  2. Antimalarial drug discovery: progress and approaches.Nature reviews. Drug discovery · 2023
    Review
  3. Article
  4. Article
  5. Review
  6. Article
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  9. Review
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  12. Selection ofProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  13. Article
  14. Article
  15. Antimicrobial agents and chemotherapy · 2017
    Article
  16. Oral Multiple Sclerosis Drugs Inhibit theFrontiers in cellular and infection microbiology · 2017
    Article
  17. Drug target identification in protozoan parasites.Expert opinion on drug discovery · 2016
    Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Elumalai Pavadai
Farah El MazouniDepartments of Pharmacology, University of Texas Southwestern Medical Center at Dallas , 6001 Forest Park Blvd, Dallas, Texas 75390-9041, United States.
Sergio WittlinSwiss Tropical and Public Health Institute , Socinstrasse 57, 4002 Basel, Switzerland.
Carmen de KockDivision of Clinical Pharmacology, Department of Medicine, University of Cape Town , Observatory 7925, South Africa.
Margaret A PhillipsDepartments of Pharmacology, University of Texas Southwestern Medical Center at Dallas , 6001 Forest Park Blvd, Dallas, Texas 75390-9041, United States.
Kelly Chibale
University of Cape Town · ZAThe University of Texas Southwestern Medical Center · USUniversity of Basel · CH

Funding

Lead Optimization of DHODH Inhibitors for MalariaR01AI103947 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI Margaret A. Phillips · 2013 to 2026
$9.7M
NIAID NIH HHS R01 AI103947NIAID NIH HHS R01AI103947
6 · The paper itself

Abstract

Plasmodium falciparum dihydroorotate dehydrogenase (PfDHODH), a key enzyme in the de novo pyrimidine biosynthesis pathway, which the Plasmodium falciparum relies on exclusively for survival, has emerged as a promising target for antimalarial drugs. In an effort to discover new and potent PfDHODH inhibitors, 3D-QSAR pharmacophore models were developed based on the structures of known PfDHODH inhibitors and the validated Hypo1 model was used as a 3D search query for virtual screening of the National Cancer Institute database. The virtual hit compounds were further filtered based on molecular docking and Molecular Mechanics/Generalized Born Surface Area binding energy calculations. The combination of the pharmacophore and structure-based virtual screening resulted in the identification of nine new compounds that showed >25% inhibition of PfDHODH at a concentration of 10 μM, three of which exhibited IC50 values in the range of 0.38-20 μM. The most active compound, NSC336047, displayed species-selectivity for PfDHODH over human DHODH and inhibited parasite growth with an IC50 of 26 μM. In addition to this, 13 compounds inhibited parasite growth with IC50 values of ≤ 50 μM, 4 of which showed IC50 values in the range of 5-12 μM. These compounds could be further explored in the identification and development of more potent PfDHODH and parasite growth inhibitors.

Indexed as

AnimalsDihydroorotate DehydrogenaseEnzyme InhibitorsHumansOxidoreductases Acting on CH-CH Group DonorsPlasmodium falciparumQuantitative Structure-Activity RelationshipDihydroorotate DehydrogenaseEnzyme InhibitorsOxidoreductases Acting on CH-CH Group Donors

Identifiers

PMID26915022
PMCPMC4871132
OpenAlexW2294346154

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.