Evidence map›Paper›PMID 26914580›Full record

ArticlePloS one2016

Development of the Intestinal RNA Virus Community of Healthy Broiler Chickens.

Jigna D Shah, Prerak T Desai, Ying Zhang, Sarah K Scharber, Joshua Baller, Zheng S Xing, Carol J Cardona

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Jigna D ShahVeterinary and Biomedical Sciences, University of Minnesota, Saint Paul, Minnesota, United States of America.
Prerak T DesaiMicrobiology and Molecular Genetics, University of California-Irvine, Irvine, California, United States of America.
Ying ZhangMinnesota Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota, United States of America.
Sarah K ScharberVeterinary and Biomedical Sciences, University of Minnesota, Saint Paul, Minnesota, United States of America.
Joshua BallerMinnesota Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota, United States of America.
Zheng S XingVeterinary and Biomedical Sciences, University of Minnesota, Saint Paul, Minnesota, United States of America.
Carol J CardonaVeterinary and Biomedical Sciences, University of Minnesota, Saint Paul, Minnesota, United States of America.
University of Minnesota · USUniversity of California, Irvine · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Several RNA viruses such as astrovirus, rotavirus, reovirus and parvovirus have been detected in both healthy and diseased commercial poultry flocks. The aim of this study was to characterize (a) the development of the RNA viral community in the small intestines of healthy broiler chickens from hatch through 6 weeks of age (market age) and (b) the contribution of the breeder source vs. bird age in development of the community structure. Intestinal tissue samples were harvested from breeders and their progeny, processed for viral RNA extraction and sequenced using Illumina Hiseq sequencing technology resulting in 100 bp PE reads. The results from this study indicated that the breeder source influenced the RNA viral community only at hatch but later environment i.e. bird age had the more significant effect. The most abundant RNA viral family detected at 2, 4 and 6 weeks of age was Astroviridae, which decreased in abundance with age while the abundance of Picornaviridae increased with age.

Indexed as

Age FactorsAnimalsBase SequenceChickensGastrointestinal MicrobiomeGenetic VariationHigh-Throughput Nucleotide SequencingIntestine, SmallMolecular TypingPoultry DiseasesRNA, ViralRNA VirusesSequence Analysis, RNARNA, Viral

Identifiers

PMID26914580
PMCPMC4767880
OpenAlexW2277656774

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.