Evidence map›Paper›PMID 26913091›Full record

ArticleStandards in genomic sciences2016

Isolation and complete genome sequence of the thermophilic Geobacillus sp. 12AMOR1 from an Arctic deep-sea hydrothermal vent site.

Juliane Wissuwa, Runar Stokke, Anita-Elin Fedøy, Kjersti Lian, Arne Oskar Smalås, Ida Helene Steen

Open access · goldAbstract readCase Reports
In one paragraph

Article in Standards in genomic sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.1field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Thermostable Proteases fromMicroorganisms · 2025
    Review
  4. Review
  5. Crystal Structure of 4,6-α-Glucanotransferase GtfC-ΔC from ThermophilicJournal of agricultural and food chemistry · 2022
    Article
  6. Article
  7. Article
  8. A Thermostable Monoacylglycerol Lipase from MarineInternational journal of molecular sciences · 2019
    Article
  9. Article
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Juliane WissuwaCentre for Geobiology, University of Bergen, N-5020 Bergen, Norway ; Department of Biology, University of Bergen, N-5020 Bergen, Norway.
Runar StokkeCentre for Geobiology, University of Bergen, N-5020 Bergen, Norway ; Department of Biology, University of Bergen, N-5020 Bergen, Norway.
Anita-Elin FedøyCentre for Geobiology, University of Bergen, N-5020 Bergen, Norway ; Department of Biology, University of Bergen, N-5020 Bergen, Norway.
Kjersti LianThe Norwegian Structural Biology Center (NorStruct), Department of Chemistry, UIT - The Arctic University of Norway, 9037 Tromsø, Norway.
Arne Oskar SmalåsThe Norwegian Structural Biology Center (NorStruct), Department of Chemistry, UIT - The Arctic University of Norway, 9037 Tromsø, Norway.
Ida Helene SteenCentre for Geobiology, University of Bergen, N-5020 Bergen, Norway ; Department of Biology, University of Bergen, N-5020 Bergen, Norway.
University of Bergen · NOUiT The Arctic University of Norway · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Members of the genus Geobacillus have been isolated from a wide variety of habitats worldwide and are the subject for targeted enzyme utilization in various industrial applications. Here we report the isolation and complete genome sequence of the thermophilic starch-degrading Geobacillus sp. 12AMOR1. The strain 12AMOR1 was isolated from deep-sea hot sediment at the Jan Mayen hydrothermal Vent Site. Geobacillus sp. 12AMOR1 consists of a 3,410,035 bp circular chromosome and a 32,689 bp plasmid with a G + C content of 52 % and 47 %, respectively. The genome comprises 3323 protein-coding genes, 88 tRNA species and 10 rRNA operons. The isolate grows on a suite of sugars, complex polysaccharides and proteinous carbon sources. Accordingly, a versatility of genes encoding carbohydrate-active enzymes (CAZy) and peptidases were identified in the genome. Expression, purification and characterization of an enzyme of the glycoside hydrolase family 13 revealed a starch-degrading capacity and high thermal stability with a melting temperature of 76.4 °C. Altogether, the data obtained point to a new isolate from a marine hydrothermal vent with a large bioprospecting potential.

Indexed as

BioprospectingEnzymesGeobacillusThermophile

Identifiers

PMID26913091
PMCPMC4765119
OpenAlexW2274323822

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.