Evidence map›Paper›PMID 26913020›Full record

ArticleFrontiers in microbiology2016

Assembly and Succession of Iron Oxide Microbial Mat Communities in Acidic Geothermal Springs.

Jacob P Beam, Hans C Bernstein, Zackary J Jay, Mark A Kozubal, Ryan deM Jennings, Susannah G Tringe, William P Inskeep

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
4.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Mechanisms of Mineral Substrate Acquisition in a Thermoacidophile.Applied and environmental microbiology · 2018
    Article
  7. Article
  8. Ecological Succession of Sulfur-OxidizingFrontiers in microbiology · 2018
    Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Jacob P BeamDepartment of Land Resources and Environmental Sciences, Thermal Biology Institute, Montana State University Bozeman, MT, USA.
Hans C BernsteinDepartment of Chemical and Biological Engineering, Center for Biofilm Engineering, Montana State UniversityBozeman, MT, USA; Biodetection Science and Biological Science Division, Pacific Northwest National LaboratoryRichland, WA, USA.
Zackary J JayDepartment of Land Resources and Environmental Sciences, Thermal Biology Institute, Montana State UniversityBozeman, MT, USA; Department of Chemical and Biological Engineering, Center for Biofilm Engineering, Montana State UniversityBozeman, MT, USA.
Mark A KozubalDepartment of Land Resources and Environmental Sciences, Thermal Biology Institute, Montana State University Bozeman, MT, USA.
Ryan deM JenningsDepartment of Land Resources and Environmental Sciences, Thermal Biology Institute, Montana State University Bozeman, MT, USA.
Susannah G TringeUnited States Department of Energy Joint Genome Institute Walnut Creek, CA, USA.
William P InskeepDepartment of Land Resources and Environmental Sciences, Thermal Biology Institute, Montana State University Bozeman, MT, USA.
Montana State University · USJoint Genome Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Biomineralized ferric oxide microbial mats are ubiquitous features on Earth, are common in hot springs of Yellowstone National Park (YNP, WY, USA), and form due to direct interaction between microbial and physicochemical processes. The overall goal of this study was to determine the contribution of different community members to the assembly and succession of acidic high-temperature Fe(III)-oxide mat ecosystems. Spatial and temporal changes in Fe(III)-oxide accretion and the abundance of relevant community members were monitored over 70 days using sterile glass microscope slides incubated in the outflow channels of two acidic geothermal springs (pH = 3-3.5; temperature = 68-75°C) in YNP. Hydrogenobaculum spp. were the most abundant taxon identified during early successional stages (4-40 days), and have been shown to oxidize arsenite, sulfide, and hydrogen coupled to oxygen reduction. Iron-oxidizing populations of Metallosphaera yellowstonensis were detected within 4 days, and reached steady-state levels within 14-30 days, corresponding to visible Fe(III)-oxide accretion. Heterotrophic archaea colonized near 30 days, and emerged as the dominant functional guild after 70 days and in mature Fe(III)-oxide mats (1-2 cm thick). First-order rate constants of Fe(III)-oxide accretion ranged from 0.046 to 0.05 day(-1), and in situ microelectrode measurements showed that the oxidation of Fe(II) is limited by the diffusion of O2 into the Fe(III)-oxide mat. The formation of microterracettes also implicated O2 as a major variable controlling microbial growth and subsequent mat morphology. The assembly and succession of Fe(III)-oxide mat communities follows a repeatable pattern of colonization by lithoautotrophic organisms, and the subsequent growth of diverse organoheterotrophs. The unique geochemical signatures and micromorphology of extant biomineralized Fe(III)-oxide mats are also useful for understanding other Fe(II)-oxidizing systems.

Indexed as

archaeabiomineralizationHydrogenobaculumlithoautotrophMetallosphaeraorganoheterotrophoxygen

Identifiers

PMID26913020
PMCPMC4753309
OpenAlexW2297680812

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.