Evidence map›Paper›PMID 26912394›Full record

ArticleScientific reports2016

Large-scale mitogenomics enables insights into Schizophora (Diptera) radiation and population diversity.

Ana Carolina M Junqueira, Ana Maria L Azeredo-Espin, Daniel F Paulo, Marco Antonio T Marinho, Lynn P Tomsho, Daniela I Drautz-Moses, Rikky W Purbojati, Aakrosh Ratan, Stephan C Schuster

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
11.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 124 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 3 countries.

Ana Carolina M JunqueiraSingapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, 637551.
Ana Maria L Azeredo-EspinCentro de Biologia Molecular e Engenharia Genética and Departamento de Genética, Evolução e Bioagentes, Universidade Estadual de Campinas, Campinas, SP, 13083-875, Brazil.
Daniel F PauloCentro de Biologia Molecular e Engenharia Genética and Departamento de Genética, Evolução e Bioagentes, Universidade Estadual de Campinas, Campinas, SP, 13083-875, Brazil.
Marco Antonio T MarinhoFaculdade de Filosofia Ciências e Letras de Ribeirão Preto, Departamento de Biologia, Universidade de São Paulo, Ribeirão Preto, SP, 14040-901, Brazil.
Lynn P TomshoCenter for Comparative Genomics and Bioinformatics, Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, 16802, USA.
Daniela I Drautz-MosesSingapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, 637551.
Rikky W PurbojatiSingapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, 637551.
Aakrosh RatanDepartment of Public Health Sciences and Center for Public Health Genomics, University of Virginia, Charlottesville, VA, 22908, USA.
Stephan C SchusterSingapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, 637551.
Nanyang Technological University · SGSingapore Centre for Environmental Life Sciences Engineering · SGUniversidade Estadual de Campinas (UNICAMP) · BROffice of Public Health Genomics · USPennsylvania State University · USUniversidade de São Paulo · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

True flies are insects of the order Diptera and encompass one of the most diverse groups of animals on Earth. Within dipterans, Schizophora represents a recent radiation of insects that was used as a model to develop a pipeline for generating complete mitogenomes using various sequencing platforms and strategies. 91 mitogenomes from 32 different species were sequenced and assembled with high fidelity, using amplicon, whole genome shotgun or single molecule sequencing approaches. Based on the novel mitogenomes, we estimate the origin of Schizophora within the Cretaceous-Paleogene (K-Pg) boundary, about 68.3 Ma. Detailed analyses of the blowfly family (Calliphoridae) place its origin at 22 Ma, concomitant with the radiation of grazing mammals. The emergence of ectoparasitism within calliphorids was dated 6.95 Ma for the screwworm fly and 2.3 Ma for the Australian sheep blowfly. Varying population histories were observed for the blowfly Chrysomya megacephala and the housefly Musca domestica samples in our dataset. Whereas blowflies (n = 50) appear to have undergone selective sweeps and/or severe bottlenecks in the New World, houseflies (n = 14) display variation among populations from different zoogeographical zones and low levels of gene flow. The reported high-throughput mitogenomics approach for insects enables new insights into schizophoran diversity and population history of flies.

Indexed as

Genetic VariationGenome, MitochondrialAnimalsBayes TheoremBiodiversityDipteraDNA, MitochondrialHaplotypesHigh-Throughput Nucleotide SequencingPhylogenyPolymerase Chain ReactionSequence Analysis, DNADNA, Mitochondrial

Identifiers

PMID26912394
PMCPMC4766414
OpenAlexW2277950136

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.