Evidence map›Paper›PMID 26911935›Full record

ArticleBMC cancer2016

Molecular association of glucose-6-phosphate isomerase and pyruvate kinase M2 with glyceraldehyde-3-phosphate dehydrogenase in cancer cells.

Mahua R Das, Arup K Bag, Shekhar Saha, Alok Ghosh, Sumit K Dey, Provas Das, Chitra Mandal, Subhankar Ray, Saikat Chakrabarti, Manju Ray and 1 more

Open access · goldAbstract read
In one paragraph

Article in BMC cancer, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Review
  7. Article
  8. Review
  9. Review
  10. Review
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Mahua R DasDepartment of Biological Chemistry, Indian Association for the Cultivation of Science, Kolkata, 700032, India.
Arup K BagCancer Biology and Inflammatory Disorder Division, Indian Institute of Chemical Biology, Kolkata, 700032, India.
Shekhar SahaDepartment of Biological Chemistry, Indian Association for the Cultivation of Science, Kolkata, 700032, India.
Alok GhoshDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, TX, 77843-3474, USA.
Sumit K DeyDepartment of Biological Chemistry, Indian Association for the Cultivation of Science, Kolkata, 700032, India.
Provas DasDepartment of Biological Chemistry, Indian Association for the Cultivation of Science, Kolkata, 700032, India.
Chitra MandalCancer Biology and Inflammatory Disorder Division, Indian Institute of Chemical Biology, Kolkata, 700032, India.
Subhankar Ray13 Regent Estate, Kolkata, 700 092, India.
Saikat ChakrabartiStructural Biology and Bioinformatics Division, Indian Institute of Chemical Biology, Jadavpur, Kolkata, 700 032, India.
Manju RayDepartment of Biophysics, Bose Institute, Kolkata, India. manjuray@mail.jcbose.ac.in.
Siddhartha S JanaDepartment of Biological Chemistry, Indian Association for the Cultivation of Science, Kolkata, 700032, India. bcssj@iacs.res.in.
Indian Association for the Cultivation of Science · INIndian Institute of Chemical Biology · INBose Institute · INTexas A&M University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundFor a long time cancer cells are known for increased uptake of glucose and its metabolization through glycolysis. Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) is a key regulatory enzyme of this pathway and can produce ATP through oxidative level of phosphorylation. Previously, we reported that GAPDH purified from a variety of malignant tissues, but not from normal tissues, was strongly inactivated by a normal metabolite, methylglyoxal (MG). Molecular mechanism behind MG mediated GAPDH inhibition in cancer cells is not well understood.

methodsGAPDH was purified from Ehrlich ascites carcinoma (EAC) cells based on its enzymatic activity. GAPDH associated proteins in EAC cells and 3-methylcholanthrene (3MC) induced mouse tumor tissue were detected by mass spectrometry analysis and immunoprecipitation (IP) experiment, respectively. Interacting domains of GAPDH and its associated proteins were assessed by in silico molecular docking analysis. Mechanism of MG mediated GAPDH inactivation in cancer cells was evaluated by measuring enzyme activity, Circular dichroism (CD) spectroscopy, IP and mass spectrometry analyses.

resultHere, we report that GAPDH is associated with glucose-6-phosphate isomerase (GPI) and pyruvate kinase M2 (PKM2) in Ehrlich ascites carcinoma (EAC) cells and also in 3-methylcholanthrene (3MC) induced mouse tumor tissue. Molecular docking analyses suggest C-terminal domain preference for the interaction between GAPDH and GPI. However, both C and N termini of PKM2 might be interacting with the C terminal domain of GAPDH. Expression of both PKM2 and GPI is increased in 3MC induced tumor compared with the normal tissue. In presence of 1 mM MG, association of GAPDH with PKM2 or GPI is not perturbed, but the enzymatic activity of GAPDH is reduced to 26.8 ± 5 % in 3MC induced tumor and 57.8 ± 2.3 % in EAC cells. Treatment of MG to purified GAPDH complex leads to glycation at R399 residue of PKM2 only, and changes the secondary structure of the protein complex.

conclusionPKM2 may regulate the enzymatic activity of GAPDH. Increased enzymatic activity of GAPDH in tumor cells may be attributed to its association with PKM2 and GPI. Association of GAPDH with PKM2 and GPI could be a signature for cancer cells. Glycation at R399 of PKM2 and changes in the secondary structure of GAPDH complex could be one of the mechanisms by which GAPDH activity is inhibited in tumor cells by MG.

Indexed as

AnimalsCarcinoma, Ehrlich TumorDisease Models, AnimalEnzyme ActivationGene ExpressionGlucose-6-Phosphate IsomeraseGlyceraldehyde-3-Phosphate DehydrogenasesMass SpectrometryMiceNeoplasmsProtein BindingProtein Interaction Domains and MotifsPyruvaldehydePyruvate KinaseGlucose-6-Phosphate IsomeraseGlyceraldehyde-3-Phosphate DehydrogenasesPyruvaldehydePyruvate Kinase

Identifiers

PMID26911935
PMCPMC4766697
OpenAlexW2273667338

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.