Evidence map›Paper›PMID 26911901›Full record

ArticleScientific reports2016

Detection of substrate-dependent conformational changes in the P450 fold by nuclear magnetic resonance.

Allison M Colthart, Drew R Tietz, Yuhua Ni, Jessica L Friedman, Marina Dang, Thomas C Pochapsky

Abstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

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  17. Entropic contribution to enhanced thermal stability in the thermostable P450 CYP119.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  18. Article
  19. Spectroscopic studies of the cytochrome P450 reaction mechanisms.Biochimica et biophysica acta. Proteins and proteomics · 2018
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Allison M ColthartDepartments of Chemistry and Biochemistry Brandeis University, 415 South St., Waltham MA 02454-9110, USA.
Drew R TietzDepartments of Chemistry and Biochemistry Brandeis University, 415 South St., Waltham MA 02454-9110, USA.
Yuhua NiDepartments of Chemistry and Biochemistry Brandeis University, 415 South St., Waltham MA 02454-9110, USA.
Jessica L FriedmanDepartments of Chemistry and Biochemistry Brandeis University, 415 South St., Waltham MA 02454-9110, USA.
Marina DangDepartments of Chemistry and Biochemistry Brandeis University, 415 South St., Waltham MA 02454-9110, USA.
Thomas C PochapskyDepartments of Chemistry and Biochemistry Brandeis University, 415 South St., Waltham MA 02454-9110, USA.

Funding

Macromolecular Structure MechanismT32GM007596 · NIGMS · BRANDEIS UNIVERSITY · PI OPRIAN, DANIEL D · 1985 to 2019
$4.5M
STRUCTURE AND DYNAMICS OF METAL-CONTAINING PROTEINSR01GM044191 · NIGMS · BRANDEIS UNIVERSITY · PI POCHAPSKY, THOMAS CHARLES · 1995 to 2012
$3.4M
An 800 MHz NMR spectrometer for the Boston areaS10RR017269 · NCRR · BRANDEIS UNIVERSITY · PI POCHAPSKY, THOMAS CHARLES · 2003 to 2003
$2.0M
NCRR NIH HHS S10 RR017269NIGMS NIH HHS R01 GM044191NIGMS NIH HHS T32 GM007596
6 · The paper itself

Abstract

Cytochrome P450 monooxygenases typically catalyze the insertion of one atom of oxygen from O2 into unactivated carbon-hydrogen and carbon-carbon bonds, with concomitant reduction of the other oxygen atom to H2O by NAD(P)H. Comparison of the average structures of the camphor hydroxylase cytochrome P450(cam) (CYP101) obtained from residual dipolar coupling (RDC)-restrained molecular dynamics (MD) in the presence and absence of substrate camphor shows structural displacements resulting from the essential collapse of the active site upon substrate removal. This collapse has conformational consequences that extend across the protein structure, none of which were observed in analogous crystallographic structures. Mutations were made to test the involvement of the observed conformational changes in substrate binding and recognition. All of the mutations performed based upon the NMR-detected perturbations, even those remote from the active site, resulted in modified substrate selectivity, enzyme efficiency and/or haem iron spin state. The results demonstrate that solution NMR can provide insights into enzyme structure-function relationships that are difficult to obtain by other methods.

Indexed as

Models, MolecularNuclear Magnetic Resonance, BiomolecularProtein ConformationBinding SitesCamphor 5-MonooxygenaseCatalytic DomainCytochrome P-450 Enzyme SystemMutationProtein BindingStructure-Activity RelationshipSubstrate SpecificityCamphor 5-MonooxygenaseCytochrome P-450 Enzyme System

Identifiers

PMID26911901
PMCPMC4766564

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.