Evidence map›Paper›PMID 26911693›Full record

ArticleThe Journal of neuroscience : the official journal of the Society for Neuroscience2016

A Bright and Fast Red Fluorescent Protein Voltage Indicator That Reports Neuronal Activity in Organotypic Brain Slices.

Ahmed S Abdelfattah, Samouil L Farhi, Yongxin Zhao, Daan Brinks, Peng Zou, Araya Ruangkittisakul, Jelena Platisa, Vincent A Pieribone, Klaus Ballanyi, Adam E Cohen and 1 more

Erratum issuedAbstract read
In one paragraph

Article in The Journal of neuroscience : the official journal of the Society for Neuroscience, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 87 papers.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

87 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Harnessing Intelligence from Brain Cells In Vitro.The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry · 2025
    Review
  6. Article
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  11. Article
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  14. Review
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  16. Article
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  19. Review
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27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Ahmed S AbdelfattahDepartment of Chemistry, University of Alberta, Edmonton, Alberta T6G 2G2, Canada.
Samouil L FarhiDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138.ORCID http://orcid.org/0000-0003-1359-4568
Yongxin ZhaoDepartment of Chemistry, University of Alberta, Edmonton, Alberta T6G 2G2, Canada.
Daan BrinksDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138.
Peng ZouDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138.ORCID http://orcid.org/0000-0002-9798-5242
Araya RuangkittisakulDepartment of Physiology, University of Alberta, Edmonton, Alberta T6G 2H7, Canada.
Jelena PlatisaThe John B. Pierce Laboratory, Inc., New Haven, Connecticut 06519, Cellular and Molecular Physiology, Yale University School of Medicine, New Haven, Connecticut 06520.
Vincent A PieriboneThe John B. Pierce Laboratory, Inc., New Haven, Connecticut 06519, Cellular and Molecular Physiology, Yale University School of Medicine, New Haven, Connecticut 06520, Neurobiology, Yale University School of Medicine, New Haven, Connecticut 06510.ORCID http://orcid.org/0000-0002-5836-5454
Klaus BallanyiDepartment of Physiology, University of Alberta, Edmonton, Alberta T6G 2H7, Canada.
Adam E CohenDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, Department of Physics, Harvard University, Cambridge, Massachusetts 02138, and Howard Hughes Medical Institute, Harvard University, Cambridge, Massachusetts 02138.
Robert E CampbellDepartment of Chemistry, University of Alberta, Edmonton, Alberta T6G 2G2, Canada, robert.e.campbell@ualberta.ca.

Funding

Optical sensing of voltage, pH, and small molecules using microbial rhodopsinsDP2OD007428 · OD · HARVARD UNIVERSITY · PI COHEN, ADAM EZRA · 2010 to 2010
$2.5M
Genetically-Encoded Voltage Probe DevelopmentR01NS083875 · NINDS · JOHN B. PIERCE LABORATORY, INC. · PI HUGHES, THOMAS E, NITABACH, MICHAEL · 2013 to 2016
$2.3M
Development of Protein-based Voltage ProbesU01NS090565 · NINDS · JOHN B. PIERCE LABORATORY, INC. · PI PIERIBONE, VINCENT A · 2014 to 2016
$1.7M
Engineering Microbial Rhodopsins as Optical Voltage SensorsR01EB012498 · NIBIB · HARVARD UNIVERSITY · PI COHEN, ADAM EZRA · 2011 to 2014
$1.5M
Canadian Institutes of Health Research MOP-123514Howard Hughes Medical InstituteNIBIB NIH HHS 1-R01-EB012498-01NIBIB NIH HHS R01 EB012498NIH HHS 1-DP2-OD007428NIH HHS DP2 OD007428NINDS NIH HHS R01 NS083875NINDS NIH HHS U01 NS090565
6 · The paper itself

Abstract

Optical imaging of voltage indicators based on green fluorescent proteins (FPs) or archaerhodopsin has emerged as a powerful approach for detecting the activity of many individual neurons with high spatial and temporal resolution. Relative to green FP-based voltage indicators, a bright red-shifted FP-based voltage indicator has the intrinsic advantages of lower phototoxicity, lower autofluorescent background, and compatibility with blue-light-excitable channelrhodopsins. Here, we report a bright red fluorescent voltage indicator (fluorescent indicator for voltage imaging red; FlicR1) with properties that are comparable to the best available green indicators. To develop FlicR1, we used directed protein evolution and rational engineering to screen libraries of thousands of variants. FlicR1 faithfully reports single action potentials (∼3% ΔF/F) and tracks electrically driven voltage oscillations at 100 Hz in dissociated Sprague Dawley rat hippocampal neurons in single trial recordings. Furthermore, FlicR1 can be easily imaged with wide-field fluorescence microscopy. We demonstrate that FlicR1 can be used in conjunction with a blue-shifted channelrhodopsin for all-optical electrophysiology, although blue light photoactivation of the FlicR1 chromophore presents a challenge for applications that require spatially overlapping yellow and blue excitation.

Indexed as

AnimalsAnimals, NewbornCells, CulturedFemaleFluorescent DyesHEK293 CellsHeLa CellsHippocampusHumansLuminescent ProteinsMaleMicroscopy, FluorescenceNeuronsOrgan Culture TechniquesRatsRats, Sprague-DawleyFluorescent DyesLuminescent ProteinsRed Fluorescent Proteinbiosensorsfluorescence imagingfluorescent proteinsgenetically encoded indicatorsprotein engineeringvoltage imaging

Identifiers

PMID26911693
PMCPMC4764664

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.