Evidence map›Paper›PMID 26908617›Full record

ArticleHuman molecular genetics2016

The handedness-associated PCSK6 locus spans an intronic promoter regulating novel transcripts.

Robert Shore, Laura Covill, Kerry A Pettigrew, William M Brandler, Rebeca Diaz, Yiwang Xu, Javier A Tello, Joel B Talcott, Dianne F Newbury, John Stein and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Triplets, birthweight, and handedness.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Robert ShoreSchool of Medicine, University of St Andrews, St Andrews KY169TF, UK.
Laura CovillWellcome Trust Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK.
Kerry A PettigrewSchool of Medicine, University of St Andrews, St Andrews KY169TF, UK.
William M BrandlerWellcome Trust Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK.
Rebeca DiazSchool of Medicine, University of St Andrews, St Andrews KY169TF, UK.
Yiwang XuSchool of Medicine, University of St Andrews, St Andrews KY169TF, UK.
Javier A TelloSchool of Medicine, University of St Andrews, St Andrews KY169TF, UK.
Joel B TalcottSchool of Life and Health Sciences, Aston University, Birmingham, UK and.
Dianne F NewburyWellcome Trust Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK.
John SteinDepartment of Physiology, Anatomy & Genetics, Parks Rd., Oxford OX1 3PT, UK.
Anthony P MonacoWellcome Trust Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK.
Silvia ParacchiniSchool of Medicine, University of St Andrews, St Andrews KY169TF, UK, sp58@st-andrews.ac.uk.
University of St Andrews · GBUniversity of Oxford · GBAston University · GBCentre for Human Genetics · GB

Funding

Medical Research Council G0900747Medical Research Council G0900747 91070Medical Research Council G1000569Medical Research Council MR/J003719/1Wellcome TrustWellcome Trust 090532/Z/09/ZWellcome Trust 097831/Z/11/Z
6 · The paper itself

Abstract

We recently reported the association of the PCSK6 gene with handedness through a quantitative genome-wide association study (GWAS; P < 0.5 × 10(-8)) for a relative hand skill measure in individuals with dyslexia. PCSK6 activates Nodal, a morphogen involved in regulating left-right body axis determination. Therefore, the GWAS data suggest that the biology underlying the patterning of structural asymmetries may also contribute to behavioural laterality, e.g. handedness. The association is further supported by an independent study reporting a variable number tandem repeat (VNTR) within the same PCSK6 locus to be associated with degree of handedness in a general population cohort. Here, we have conducted a functional analysis of the PCSK6 locus combining further genetic analysis, in silico predictions and molecular assays. We have shown that the previous GWAS signal was not tagging a VNTR effect, suggesting that the two markers have independent effects. We demonstrated experimentally that one of the top GWAS-associated markers, rs11855145, directly alters the binding site for a nuclear factor. Furthermore, we have shown that the predicted regulatory region adjacent to rs11855415 acts as a bidirectional promoter controlling the expression of novel RNA transcripts. These include both an antisense long non-coding RNA (lncRNA) and a short PCSK6 isoform predicted to be coding. This is the first molecular characterization of a handedness-associated locus that supports the role of common variants in non-coding sequences in influencing complex phenotypes through gene expression regulation.

Indexed as

Gene Expression RegulationGenome-Wide Association StudyFunctional LateralityGenetic VariationHumansIntronsMinisatellite RepeatsNodal ProteinPromoter Regions, GeneticProprotein ConvertasesRNA, Long NoncodingSerine EndopeptidasesNodal ProteinPCSK6 protein, humanProprotein ConvertasesRNA, Long NoncodingSerine Endopeptidases

Identifiers

PMID26908617
PMCPMC4986331
OpenAlexW2291343563

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.