Evidence map›Paper›PMID 26908613›Full record

ArticleHuman molecular genetics2016

Mutations in POMGNT1 cause non-syndromic retinitis pigmentosa.

Mingchu Xu, Takeyuki Yamada, Zixi Sun, Aiden Eblimit, Irma Lopez, Feng Wang, Hiroshi Manya, Shan Xu, Li Zhao, Yumei Li and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 1 pooled it
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 1 synthesis or guideline pooled it, 47 citations in OpenAlex.

  1. Pooled it
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  6. Review
  7. Article
  8. Article
  9. Deletion of POMT2 in Zebrafish Causes Degeneration of Photoreceptors.International journal of molecular sciences · 2022
    Article
  10. Genetic dissection of non-syndromic retinitis pigmentosa.Indian journal of ophthalmology · 2022
    Review
  11. Article
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 6 countries.

Mingchu XuDepartment of Molecular and Human Genetics, Human Genome Sequencing Center.
Takeyuki YamadaMolecular Glycobiology, Research Team for Mechanism of Aging, Tokyo Metropolitan Geriatric Hospital and Institute of Gerontology, Tokyo 173-0015, Japan.
Zixi SunDepartment of Ophthalmology, Peking Union Medical College, Beijing 100730, China.
Aiden EblimitDepartment of Molecular and Human Genetics, Human Genome Sequencing Center.
Irma LopezMcGill Ocular Genetics Laboratory, McGill University Health Centre, Montreal, Quebec H3H 1P3, Canada and.
Feng WangDepartment of Molecular and Human Genetics, Human Genome Sequencing Center.
Hiroshi ManyaMolecular Glycobiology, Research Team for Mechanism of Aging, Tokyo Metropolitan Geriatric Hospital and Institute of Gerontology, Tokyo 173-0015, Japan.
Shan XuDepartment of Molecular and Human Genetics, Human Genome Sequencing Center.
Li ZhaoDepartment of Molecular and Human Genetics, Human Genome Sequencing Center, Structural and Computational Biology and Molecular Biophysics Graduate Program.
Yumei LiDepartment of Molecular and Human Genetics, Human Genome Sequencing Center.
Adva KimchiDepartments of Ophthalmology, Hadassah-Hebrew University Medical Center, Jerusalem 91120, Israel.
Dror SharonDepartments of Ophthalmology, Hadassah-Hebrew University Medical Center, Jerusalem 91120, Israel.
Ruifang SuiDepartment of Ophthalmology, Peking Union Medical College, Beijing 100730, China.
Tamao EndoMolecular Glycobiology, Research Team for Mechanism of Aging, Tokyo Metropolitan Geriatric Hospital and Institute of Gerontology, Tokyo 173-0015, Japan.
Robert K KoenekoopMcGill Ocular Genetics Laboratory, McGill University Health Centre, Montreal, Quebec H3H 1P3, Canada and.
Rui ChenDepartment of Molecular and Human Genetics, Human Genome Sequencing Center, Structural and Computational Biology and Molecular Biophysics Graduate Program, The Verna and Marrs Mclean Department of Biochemistry and Molecular Biology and Program in Developmental Biology, Baylor College of Medicine, Houston, TX 77030, USA, ruichen@bcm.edu.
Tokyo Metropolitan Geriatric Hospital · JPHadassah Medical Center · ILMcGill University Health Centre · CAPeking Union Medical College Hospital · CNBaylor College of Medicine · USInstitute of Molecular Biology and Biophysics · RU

Funding

VISION RESEARCH CENTERP30EY002520 · NEI · BAYLOR COLLEGE OF MEDICINE · PI Samuel M Wu · 1985 to 2026
$14.8M
GENETICS OF EARLY ONSET RETINAL DISEASESR01EY018571 · NEI · UNIVERSITY OF CALIFORNIA-IRVINE · PI RUI CHEN · 2008 to 2026
$7.2M
Molecular Basis of Human Visual System DisordersR01EY022356 · NEI · UNIVERSITY OF CALIFORNIA-IRVINE · PI RUI CHEN · 2012 to 2026
$6.1M
FGI: Acquisition of an Illumina Genome Analyzer System for Functional Genomic ResS10RR026550 · NCRR · BAYLOR COLLEGE OF MEDICINE · PI CHEN, RUI · 2010 to 2010
$500k
CIHRNCRR NIH HHS 1S10RR026550NCRR NIH HHS S10 RR026550NEI NIH HHS P30 EY002520NEI NIH HHS R01 EY018571NEI NIH HHS R01EY018571NEI NIH HHS R01 EY022356NEI NIH HHS R01EY022356
6 · The paper itself

Abstract

A growing number of human diseases have been linked to defects in protein glycosylation that affects a wide range of organs. Among them, O-mannosylation is an unusual type of protein glycosylation that is largely restricted to the muscular and nerve system. Consistently, mutations in genes involved in the O-mannosylation pathway result in infantile-onset, severe developmental defects involving skeleton muscle, brain and eye, such as the muscle-eye-brain disease (MIM no. 253280). However, the functional importance of O-mannosylation in these tissues at later stages remains largely unknown. In our study, we have identified recessive mutations in POMGNT1, which encodes an essential component in O-mannosylation pathway, in three unrelated families with autosomal recessive retinitis pigmentosa (RP), but without extraocular involvement. Enzymatic assay of these mutant alleles demonstrate that they greatly reduce the POMGNT1 enzymatic activity and are likely to be hypomorphic. Immunohistochemistry shows that POMGNT1 is specifically expressed in photoreceptor basal body. Taken together, our work identifies a novel disease-causing gene for RP and indicates that proper protein O-mannosylation is not only essential for early organ development, but also important for maintaining survival and function of the highly specialized retinal cells at later stages.

Indexed as

MutationAdultAgedAnimalsCells, CulturedExomeFemaleGenes, RecessiveGenetic Predisposition to DiseaseGlycosylationHumansMaleMiceMiddle AgedN-AcetylglucosaminyltransferasesPedigreeN-Acetylglucosaminyltransferasesprotein O-mannose beta-1,2-N-acetylglucosaminyltransferase

Identifiers

PMID26908613
PMCPMC4805308
OpenAlexW2279683159

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.