Evidence map›Paper›PMID 26908262›Full record

ArticleScientific reports2016

Characterization of a novel Achromobacter xylosoxidans specific siphoviruse: phiAxp-1.

Erna Li, Jiangtao Zhao, Yanyan Ma, Xiao Wei, Huan Li, Weishi Lin, Xuesong Wang, Chao Li, Zhiqiang Shen, Ruixiang Zhao and 4 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.8field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Review
  3. CompoundingViruses · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 1 country.

Erna LiCollege of Food Science, South China Agricultural University, Guangzhou, China, 510642.
Jiangtao ZhaoEmergency Department, the Fifth Affiliated Hospital of Zhengzhou University, Zhengzhou, China, 450052.
Yanyan MaCollege of Food Science, Henan Institute of Science and Technology, Xinxiang, China, 453003.
Xiao WeiInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, China, 100071.
Huan LiInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, China, 100071.
Weishi LinInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, China, 100071.
Xuesong WangInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, China, 100071.
Chao LiKey Laboratory of Risk Assessment and Control for Environment and Food Safety, Tianjin Institute of Health and Environmental Medicine, Tianjin, China, 300050.
Zhiqiang ShenKey Laboratory of Risk Assessment and Control for Environment and Food Safety, Tianjin Institute of Health and Environmental Medicine, Tianjin, China, 300050.
Ruixiang ZhaoCollege of Food Science, Henan Institute of Science and Technology, Xinxiang, China, 453003.
Aimin JiangCollege of Food Science, South China Agricultural University, Guangzhou, China, 510642.
Huiying YangState Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China, 100071.
Jing YuanInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, China, 100071.
Xiangna ZhaoInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, China, 100071.
Academy of Military Medical Sciences · CNHenan Institute of Science and Technology · CNSouth China Agricultural University · CNFifth Affiliated Hospital of Zhengzhou University · CNInstitute of Microbiology · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacteriophages have recently been considered as an alternative biocontrol tool because of the widespread occurrence of antimicrobial-resistant Achromobacter xylosoxidans. Herein, we isolated a virulent bacteriophage (phiAxp-1) from a water sample of the Bohai sea of China that specifically infects A. xylosoxidans. Transmission electron microscopy revealed that phage phiAxp-1 belongs to the Siphoviridae. We sequenced the genome of phiAxp-1, which comprises 45,045 bp with 64 open reading frames. Most of the proteins encoded by phiAxp-1 have no similarity to sequences in the public databases. Twenty-one proteins with assigned functions share weak homology with those of other dsDNA bacteriophages infecting diverse hosts, such as Burkholderia phage KL1, Pseudomonas phage 73, Pseudomonas phage vB_Pae-Kakheti25, Pseudomonas phage vB_PaeS_SCH_Ab26, Acinetobacter phage IME_AB3 and Achromobacter phage JWX. The genome can be divided into different clusters for the head and tail structure, DNA replication and mazG. The sequence and genomic organization of bacteriophage phiAxp-1 are clearly distinct from other known Siphoviridae phages; therefore, we propose that it is a member of a novel genus of the Siphoviridae family. Furthermore, one-step growth curve and stability studies of the phage were performed, and the specific receptor of phiAxp-1 was identified as the lipopolysaccharide of A. xylosoxidans.

Indexed as

Genome, ViralAchromobacter denitrificansChromosome MappingDNA, ViralLipopolysaccharidesMultigene FamilyOpen Reading FramesReceptors, VirusSeawaterSequence Analysis, DNASiphoviridaeVirus InternalizationDNA, ViralLipopolysaccharidesReceptors, Virus

Identifiers

PMID26908262
PMCPMC4764938
OpenAlexW2405461326

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.