Evidence map›Paper›PMID 26908133›Full record

ArticleNature communications2016

Mutation allele burden remains unchanged in chronic myelomonocytic leukaemia responding to hypomethylating agents.

Jane Merlevede, Nathalie Droin, Tingting Qin, Kristen Meldi, Kenichi Yoshida, Margot Morabito, Emilie Chautard, Didier Auboeuf, Pierre Fenaux, Thorsten Braun and 24 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 132 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
132citing papers in PubMed, 3 pooled it
22.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

132 citing papers in PubMed, 3 syntheses or guidelines pooled it, 213 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Trial
  5. Trial
  6. Trial
  7. Trial
  8. Trial
  9. Trial
  10. Trial
  11. Trial
  12. Trial
  13. Trial
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

72 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

34 authors at 14 institutions in 5 countries.

Jane MerlevedeINSERM U1170, Gustave Roussy, 114, rue Edouard Vaillant, 94805 Villejuif, France.
Nathalie DroinINSERM U1170, Gustave Roussy, 114, rue Edouard Vaillant, 94805 Villejuif, France.
Tingting QinDepartment of Pathology, University of Michigan Medical School, 1500 E Medical Center Dr, Ann Arbor, Michigan 48109, USA.
Kristen MeldiDepartment of Pathology, University of Michigan Medical School, 1500 E Medical Center Dr, Ann Arbor, Michigan 48109, USA.
Kenichi YoshidaDepartment of Pathology and Tumour Biology, Kyoto University, Yoshida-Konoe-cho, Sakyo-ku, Kyoto 606-8501, Japan.
Margot MorabitoINSERM U1170, Gustave Roussy, 114, rue Edouard Vaillant, 94805 Villejuif, France.
Emilie ChautardUniversité Lyon 1, UMR CNRS 5558, Université Claude Bernard, 16 rue Raphael Dubois, Lyon 69100, France.ORCID http://orcid.org/0000-0003-1456-5347
Didier AuboeufCentre Léon Bérard, INSERM U1052, CNRS UMR5286, 8 Prom. Léa et Napoléon Bullukian, 69008 Lyon, France.
Pierre FenauxDepartment of Hematology, Assistance Publique-Hôpitaux de Paris, Hôpital Saint-Louis, 1 Avenue Claude Vellefaux, 75010 Paris, France.
Thorsten BraunDepartment of Hematology, Assistance Publique-Hôpitaux de Paris, Hôpital Avicenne, 125 Rue de Stalingrad, 93000 Bobigny, France.
Raphael ItzyksonDepartment of Hematology, Assistance Publique-Hôpitaux de Paris, Hôpital Saint-Louis, 1 Avenue Claude Vellefaux, 75010 Paris, France.
Stéphane de BottonINSERM U1170, Gustave Roussy, 114, rue Edouard Vaillant, 94805 Villejuif, France.
Bruno QuesnelCancer Research Institute de Lille, INSERM U837, 1 Place de Verdun, 59000 Lille, France.
Thérèse CommesInstitut de médecine régénératrice, Biothérapie et Institut de biologie computationnelle, INSERM U1040, Université de Montpellier, 80 avenue Augustin Fliche. 34295 Montpellier, France.
Eric JourdanDepartment of Hematology, Centre Hospitalier Universitaire de Nîmes, Université Montpellier-Nîmes, 4 Rue du Professeur Robert Debré, 30029 Nîmes, France.
William VainchenkerINSERM U1170, Gustave Roussy, 114, rue Edouard Vaillant, 94805 Villejuif, France.
Olivier BernardINSERM U1170, Gustave Roussy, 114, rue Edouard Vaillant, 94805 Villejuif, France.
Noemie Pata-MerciINSERM US23, CNRS UMS3655, Gustave Roussy, 114, rue Edouard Vaillant, 94805 Villejuif, France.
Stéphanie SolierINSERM U1170, Gustave Roussy, 114, rue Edouard Vaillant, 94805 Villejuif, France.
Velimir GayevskiyLaboratory of Genome Informatics, Kinghor Center for Clinical Genomics, Garvan Institute of Medical Research, 384 Victoria Street, Darlinghurst New South Wales 2010, Australia.
Marcel E DingerLaboratory of Genome Informatics, Kinghor Center for Clinical Genomics, Garvan Institute of Medical Research, 384 Victoria Street, Darlinghurst New South Wales 2010, Australia.ORCID http://orcid.org/0000-0003-4423-934X
Mark J CowleyLaboratory of Genome Informatics, Kinghor Center for Clinical Genomics, Garvan Institute of Medical Research, 384 Victoria Street, Darlinghurst New South Wales 2010, Australia.
Dorothée Selimoglu-BuetINSERM U1170, Gustave Roussy, 114, rue Edouard Vaillant, 94805 Villejuif, France.
Vincent MeyerCentre National de Génotypage, 2 rue Gaston Crémieux CP 5721, 91 057 Evry, France.
François ArtiguenaveCentre National de Génotypage, 2 rue Gaston Crémieux CP 5721, 91 057 Evry, France.
Jean-François DeleuzeCentre National de Génotypage, 2 rue Gaston Crémieux CP 5721, 91 057 Evry, France.
Claude PreudhommeCancer Research Institute de Lille, INSERM U837, 1 Place de Verdun, 59000 Lille, France.
Michael R StrattonCancer Genome Project, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SA, UK.
Ludmil B AlexandrovCancer Genome Project, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SA, UK.
Eric PadronDepartment of Hematology, Malignant hematology, H. Lee Moffitt Cancer Center, 12902 USF Magnolia Drive, Tampa, Florida 33612, USA.
Seishi OgawaDepartment of Pathology and Tumour Biology, Kyoto University, Yoshida-Konoe-cho, Sakyo-ku, Kyoto 606-8501, Japan.
Serge KoscielnyDepartment of Biostatistics, Gustave Roussy Cancer Center, 114 rue Edouard Vaillant, 94805 Villejuif, France.
Maria FigueroaDepartment of Pathology, University of Michigan Medical School, 1500 E Medical Center Dr, Ann Arbor, Michigan 48109, USA.
Eric SolaryINSERM U1170, Gustave Roussy, 114, rue Edouard Vaillant, 94805 Villejuif, France.
Inserm · FRAssistance Publique – Hôpitaux de Paris · FRCentre National de Recherche en Génomique Humaine · FRGarvan Institute of Medical Research · AUUniversity of Michigan · USCentre National de la Recherche Scientifique · FRKyoto University · JPUniversité Claude Bernard Lyon 1 · FRInstitut Gustave Roussy · FRLos Alamos National Laboratory · USMoffitt Cancer Center · USUniversité de Montpellier · FRUniversité Paris-Sud · FRWellcome Sanger Institute · GB

Funding

TRANSLATIONAL RESEARCHP30CA076292 · NCI · UNIVERSITY OF SOUTH FLORIDA · PI KENNETH Lynn WRIGHT · 1998 to 2026
$93.5M
NCI NIH HHS P30 CA076292
6 · The paper itself

Abstract

The cytidine analogues azacytidine and 5-aza-2'-deoxycytidine (decitabine) are commonly used to treat myelodysplastic syndromes, with or without a myeloproliferative component. It remains unclear whether the response to these hypomethylating agents results from a cytotoxic or an epigenetic effect. In this study, we address this question in chronic myelomonocytic leukaemia. We describe a comprehensive analysis of the mutational landscape of these tumours, combining whole-exome and whole-genome sequencing. We identify an average of 14±5 somatic mutations in coding sequences of sorted monocyte DNA and the signatures of three mutational processes. Serial sequencing demonstrates that the response to hypomethylating agents is associated with changes in DNA methylation and gene expression, without any decrease in the mutation allele burden, nor prevention of new genetic alteration occurence. Our findings indicate that cytosine analogues restore a balanced haematopoiesis without decreasing the size of the mutated clone, arguing for a predominantly epigenetic effect.

Indexed as

MutationAgedAged, 80 and overAllelesAntimetabolites, AntineoplasticAzacitidineCell SurvivalDecitabineDNA MethylationEpigenesis, GeneticFemaleGene Expression Regulation, NeoplasticHEK293 CellsHigh-Throughput Nucleotide SequencingHumansLeukemia, Myelomonocytic, ChronicAntimetabolites, AntineoplasticAzacitidineDecitabine

Identifiers

PMID26908133
PMCPMC4770084
OpenAlexW2291640500

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.