Evidence map›Paper›PMID 26907161›Full record

ArticleACS chemical biology2016

Structures of Trypanosome Vacuolar Soluble Pyrophosphatases: Antiparasitic Drug Targets.

Yunyun Yang, Tzu-Ping Ko, Chun-Chi Chen, Guozhong Huang, Yingying Zheng, Weidong Liu, Iren Wang, Meng-Ru Ho, Shang-Te Danny Hsu, Bing O'Dowd and 5 more

Abstract read
In one paragraph

Article in ACS chemical biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
  2. New insights into the role of acidocalcisomes in trypanosomatids.The Journal of eukaryotic microbiology · 2022
    Review
  3. Article
  4. The IPBiochimica et biophysica acta. Molecular cell research · 2021
    Review
  5. Forward Genetics in African Trypanosomes.Methods in molecular biology (Clifton, N.J.) · 2020
    Article
  6. Article
  7. Article
  8. 5-Diphosphoinositol pentakisphosphate (5-IPThe Journal of biological chemistry · 2018
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 3 countries.

Yunyun YangCollege of Biotechnology, Tianjin University of Science and Technology , Tianjin 300457, China.
Tzu-Ping KoInstitute of Biological Chemistry, Academia Sinica , Taipei 115, Taiwan.
Chun-Chi ChenIndustrial Enzymes National Engineering Laboratory, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences , Tianjin, 300308, China.
Guozhong HuangCenter for Tropical and Emerging Global Diseases, and Department of Cellular Biology, University of Georgia , Athens, Georgia 30602, United States.
Yingying ZhengIndustrial Enzymes National Engineering Laboratory, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences , Tianjin, 300308, China.
Weidong LiuIndustrial Enzymes National Engineering Laboratory, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences , Tianjin, 300308, China.
Iren WangInstitute of Biological Chemistry, Academia Sinica , Taipei 115, Taiwan.
Meng-Ru HoInstitute of Biological Chemistry, Academia Sinica , Taipei 115, Taiwan.
Shang-Te Danny HsuInstitute of Biological Chemistry, Academia Sinica , Taipei 115, Taiwan.
Bing O'DowdDepartment of Chemistry, University of Illinois at Urbana-Champaign , Urbana, Illinois 61801, United States.
Hannah C HuffDepartment of Chemistry, University of Illinois at Urbana-Champaign , Urbana, Illinois 61801, United States.
Chun-Hsiang HuangIndustrial Enzymes National Engineering Laboratory, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences , Tianjin, 300308, China.
Roberto DocampoCenter for Tropical and Emerging Global Diseases, and Department of Cellular Biology, University of Georgia , Athens, Georgia 30602, United States.
Eric OldfieldDepartment of Chemistry, University of Illinois at Urbana-Champaign , Urbana, Illinois 61801, United States.
Rey-Ting GuoIndustrial Enzymes National Engineering Laboratory, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences , Tianjin, 300308, China.
Tianjin Institute of Industrial Biotechnology · CNInstitute of Biological Chemistry, Academia Sinica · TWUniversity of Illinois Urbana-Champaign · USUniversity of Georgia · USChinese Academy of Sciences · CN

Funding

The roles of polyphosphate and acidocalcisomes in Trypanosoma bruceiR01AI077538 · NIAID · UNIVERSITY OF GEORGIA · PI DOCAMPO, ROBERTO · 2009 to 2019
$3.8M
Next generation bisphosphonates for chemo- and immuno-therapyR01CA158191 · NCI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI OLDFIELD, ERIC · 2011 to 2015
$1.6M
Pathogenesis of Trypanosoma cruzi infectionR01AI107663 · NIAID · UNIVERSITY OF GEORGIA · PI DOCAMPO, ROBERTO · 2014 to 2017
$1.5M
Pathogenesis of Trypanosoma cruzi infectionR56AI107663 · NIAID · UNIVERSITY OF GEORGIA · PI DOCAMPO, ROBERTO · 2013 to 2013
$350k
NCI NIH HHS R01 CA158191NIAID NIH HHS R01 AI077538NIAID NIH HHS R01 AI107663NIAID NIH HHS R56 AI107663
6 · The paper itself

Abstract

Trypanosomatid parasites are the causative agents of many neglected tropical diseases, including the leishmaniases, Chagas disease, and human African trypanosomiasis. They exploit unusual vacuolar soluble pyrophosphatases (VSPs), absent in humans, for cell growth and virulence and, as such, are drug targets. Here, we report the crystal structures of VSP1s from Trypanosoma cruzi and T. brucei, together with that of the T. cruzi protein bound to a bisphosphonate inhibitor. Both VSP1s form a hybrid structure containing an (N-terminal) EF-hand domain fused to a (C-terminal) pyrophosphatase domain. The two domains are connected via an extended loop of about 17 residues. Crystallographic analysis and size exclusion chromatography indicate that the VSP1s form tetramers containing head-to-tail dimers. Phosphate and diphosphate ligands bind in the PPase substrate-binding pocket and interact with several conserved residues, and a bisphosphonate inhibitor (BPH-1260) binds to the same site. On the basis of Cytoscape and other bioinformatics analyses, it is apparent that similar folds will be found in most if not all trypanosomatid VSP1s, including those found in insects (Angomonas deanei, Strigomonas culicis), plant pathogens (Phytomonas spp.), and Leishmania spp. Overall, the results are of general interest since they open the way to structure-based drug design for many of the neglected tropical diseases.

Indexed as

Amino Acid SequenceAnimalsAntiparasitic AgentsCattleChagas DiseaseCrystallography, X-RayDiphosphonatesDrug DesignHumansModels, MolecularProtein ConformationPyrophosphatasesTrypanosoma brucei bruceiTrypanosoma cruziTrypanosomiasis, BovineAntiparasitic AgentsDiphosphonatesPyrophosphatases

Identifiers

PMID26907161
PMCPMC4874902
OpenAlexW2285675398

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.