ArticleScientific reports2016
Transcriptome sequencing of Crucihimalaya himalaica (Brassicaceae) reveals how Arabidopsis close relative adapt to the Qinghai-Tibet Plateau.
Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
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28 citing papers in PubMed, 44 citations in OpenAlex.
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- A haplotype-resolved genome assembly and gene expression map of Cushion willow.Scientific data · 2025Article
- Adaptation of High-Altitude Plants to Plateau Abiotic Stresses: A Case Study of the Qinghai-Tibet Plateau.International journal of molecular sciences · 2025Review
- The Preventive Effect of Theabrownin from Ya'an Tibetan Tea Against UVB-Induced Skin Photodamage in BALB/c Mice via the MAPK/NF-κB and Nrf2 Signaling Pathways.Foods (Basel, Switzerland) · 2025Article
- Adaptation of High-Altitude Plants to Harsh Environments: Application of Phenotypic-Variation-Related Methods and Multi-Omics Techniques.International journal of molecular sciences · 2024Review
- Inorganic carbon utilization strategies of plateau aquatic plants in response to native habitats.Photosynthesis research · 2024Article
- Insights into the plateau adaptation of Salvia castanea by comparative genomic and WGCNA analyses.Journal of advanced research · 2022Article
- Comparative chloroplast genome and transcriptome analysis on the ancient genusFrontiers in plant science · 2022Article
- The Molecular Mechanism of Yellow Mushroom (Frontiers in microbiology · 2022Article
- Transcriptomes ofPlants (Basel, Switzerland) · 2021Article
- Integrated Physiological and Transcriptomic Analyses Responses to Altitude Stress in Oat (Frontiers in genetics · 2021Article
- Uncovering the role of a positive selection site of wax ester synthase/diacylglycerol acyltransferase in two closely related Stipa species in wax ester synthesis under drought stress.Journal of experimental botany · 2020Article
- Molecular footprints of selection effects and whole genome duplication (WGD) events in three blueberry species: detected by transcriptome dataset.BMC plant biology · 2020Article
- New insights into the evolutionary history ofPlant diversity · 2020Article
- The Effect of Plant Geographical Location and Developmental Stage on Root-Associated Microbiomes ofFrontiers in microbiology · 2020Article
- Physiological and transcriptome analyses of photosynthesis and chlorophyll metabolism in variegated Citrus (Shiranuhi and Huangguogan) seedlings.Scientific reports · 2019Article
- De novo transcriptome provides insights into the growth behaviour and resveratrol and trans-stilbenes biosynthesis in Dactylorhiza hatagirea - An endangered alpine terrestrial orchid of western Himalaya.Scientific reports · 2019Article
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8 authors at 5 institutions in 2 countries.
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Abstract
The extreme environment of the Qinghai-Tibet Plateau (QTP) provides an ideal natural laboratory for studies on adaptive evolution. Few genome/transcriptome based studies have been conducted on how plants adapt to the environments of QTP compared to numerous studies on vertebrates. Crucihimalaya himalaica is a close relative of Arabidopsis with typical QTP distribution, and is hoped to be a new model system to study speciation and ecological adaptation in extreme environment. In this study, we de novo generated a transcriptome sequence of C. himalaica, with a total of 49,438 unigenes. Compared to five relatives, 10,487 orthogroups were shared by all six species, and 4,286 orthogroups contain putative single copy gene. Further analysis identified 487 extremely significantly positively selected genes (PSGs) in C. himalaica transcriptome. Theses PSGs were enriched in functions related to specific adaptation traits, such as response to radiation, DNA repair, nitrogen metabolism, and stabilization of membrane. These functions are responsible for the adaptation of C. himalaica to the high radiation, soil depletion and low temperature environments on QTP. Our findings indicate that C. himalaica has evolved complex strategies for adapting to the extreme environments on QTP and provide novel insights into genetic mechanisms of highland adaptation in plants.
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