Evidence map›Paper›PMID 26904747›Full record

ArticleInternational journal of bacteriology2015

A Rapid and Sensitive Diagnostic Screening Assay for Detection of Mycobacteria Including Mycobacterium tuberculosis Directly from Sputum without Extraction.

Lisa Jane Cross, Catherine Anscombe, Timothy D McHugh, Ibrahim Abubakar, Robert John Shorten, Nicola Thorne, Cath Arnold

Abstract read
In one paragraph

Article in International journal of bacteriology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Review
  4. [Visualized detection for mycobacterium tuberculosis using loop-mediated isothermal amplification assay].Sheng wu yi xue gong cheng xue za zhi = Journal of biomedical engineering = Shengwu yixue gongchengxue zazhi · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Lisa Jane CrossGenomic Services & Development Unit, Public Health England, Microbiology Services Operations, 61 Colindale Avenue, London NW9 5HT, UK.ORCID 0000-0002-6168-4720
Catherine AnscombeGenomic Research Unit, Public Health England, Microbiology Services, 61 Colindale Avenue, London NW9 5HT, UK; Centre for Clinical Microbiology, Royal Free Campus, UCL and Department of Medical Microbiology, Royal Free Hampstead NHS Trust, Royal Free Hospital, Pond Street, London NW3 2PF, UK.ORCID 0000-0003-3049-2256
Timothy D McHughCentre for Clinical Microbiology, Royal Free Campus, UCL and Department of Medical Microbiology, Royal Free Hampstead NHS Trust, Royal Free Hospital, Pond Street, London NW3 2PF, UK.
Ibrahim AbubakarCentre for Infectious Disease Epidemiology, Mortimer Market Centre, UCL and TB Section, Public Health England, London WC1E 6JB, UK.
Robert John ShortenCentre for Clinical Microbiology, Royal Free Campus, UCL and Department of Medical Microbiology, Royal Free Hampstead NHS Trust, Royal Free Hospital, Pond Street, London NW3 2PF, UK.
Nicola ThorneGenomic Research Unit, Public Health England, Microbiology Services, 61 Colindale Avenue, London NW9 5HT, UK.
Cath ArnoldGenomic Services & Development Unit, Public Health England, Microbiology Services Operations, 61 Colindale Avenue, London NW9 5HT, UK.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We report a novel approach utilising a real-time PCR screening assay targeting a 53 bp tandemly repeated element present at various loci within the Mycobacterium tuberculosis (Mtb) genome. Positive samples were identified within a discriminatory melting curve range of 90-94°C, with results obtained in under one hour directly from decontaminated sputum samples without extraction. A panel of 89 smear-positive sputa were used for analytical validation of the assay with 100% concordance, with sensitivity matching that of culture. Cross reactivity was detected within a narrow range of mycobacteria other than tuberculosis (MOTT) (five sputa, three in silico), with the highest sensitivity within M. avium complex (MAC). A year-long head to head evaluation of the test with the GeneXpert platform was carried out with 104 consecutive samples at the Royal Free Hospital, UK. Receiver operating characteristics (ROC) analysis of the data revealed that the two tests are approximately equivalent in sensitivity, with the area under the curve being 0.85 and 0.80 for the GeneXpert and our assay, respectively, indicating that the test would be a cost effective screen prior to GeneXpert testing.

Identifiers

PMID26904747
PMCPMC4745473

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.