Evidence map›Paper›PMID 26903958›Full record

ArticleFrontiers in microbiology2016

Reassortment of Avian Influenza A/H6N6 Viruses from Live Poultry Markets in Guangdong, China.

Runyu Yuan, Lirong Zou, Yinfeng Kang, Jie Wu, Xianqiao Zeng, Jing Lu, Lijun Liang, Yingchao Song, Xin Zhang, Hanzhong Ni and 3 more

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Runyu YuanKey Laboratory for Repository and Application of Pathogenic Microbiology, Research Center for Pathogens Detection Technology of Emerging Infectious Diseases, Guangdong Provincial Center for Disease Control and PreventionGuangzhou, China; World Health Organization Collaborating Centre for Surveillance, Research and Training of Emerging Infectious DiseasesGuangzhou, China; Key Laboratory of Zoonosis Prevention and Control of Guangdong, College of Veterinary Medicine, South China Agricultural UniversityGuangzhou, China.
Lirong ZouKey Laboratory for Repository and Application of Pathogenic Microbiology, Research Center for Pathogens Detection Technology of Emerging Infectious Diseases, Guangdong Provincial Center for Disease Control and PreventionGuangzhou, China; World Health Organization Collaborating Centre for Surveillance, Research and Training of Emerging Infectious DiseasesGuangzhou, China.
Yinfeng KangKey Laboratory of Zoonosis Prevention and Control of Guangdong, College of Veterinary Medicine, South China Agricultural University Guangzhou, China.
Jie WuKey Laboratory for Repository and Application of Pathogenic Microbiology, Research Center for Pathogens Detection Technology of Emerging Infectious Diseases, Guangdong Provincial Center for Disease Control and PreventionGuangzhou, China; World Health Organization Collaborating Centre for Surveillance, Research and Training of Emerging Infectious DiseasesGuangzhou, China.
Xianqiao ZengGuangdong Provincial Institute of Public Health Guangzhou, China.
Jing LuGuangdong Provincial Institute of Public Health Guangzhou, China.
Lijun LiangKey Laboratory for Repository and Application of Pathogenic Microbiology, Research Center for Pathogens Detection Technology of Emerging Infectious Diseases, Guangdong Provincial Center for Disease Control and PreventionGuangzhou, China; World Health Organization Collaborating Centre for Surveillance, Research and Training of Emerging Infectious DiseasesGuangzhou, China.
Yingchao SongKey Laboratory for Repository and Application of Pathogenic Microbiology, Research Center for Pathogens Detection Technology of Emerging Infectious Diseases, Guangdong Provincial Center for Disease Control and PreventionGuangzhou, China; World Health Organization Collaborating Centre for Surveillance, Research and Training of Emerging Infectious DiseasesGuangzhou, China.
Xin ZhangKey Laboratory for Repository and Application of Pathogenic Microbiology, Research Center for Pathogens Detection Technology of Emerging Infectious Diseases, Guangdong Provincial Center for Disease Control and PreventionGuangzhou, China; World Health Organization Collaborating Centre for Surveillance, Research and Training of Emerging Infectious DiseasesGuangzhou, China.
Hanzhong NiKey Laboratory for Repository and Application of Pathogenic Microbiology, Research Center for Pathogens Detection Technology of Emerging Infectious Diseases, Guangdong Provincial Center for Disease Control and PreventionGuangzhou, China; World Health Organization Collaborating Centre for Surveillance, Research and Training of Emerging Infectious DiseasesGuangzhou, China.
Jinyan LinKey Laboratory for Repository and Application of Pathogenic Microbiology, Research Center for Pathogens Detection Technology of Emerging Infectious Diseases, Guangdong Provincial Center for Disease Control and PreventionGuangzhou, China; World Health Organization Collaborating Centre for Surveillance, Research and Training of Emerging Infectious DiseasesGuangzhou, China.
Ming LiaoKey Laboratory of Zoonosis Prevention and Control of Guangdong, College of Veterinary Medicine, South China Agricultural University Guangzhou, China.
Changwen KeKey Laboratory for Repository and Application of Pathogenic Microbiology, Research Center for Pathogens Detection Technology of Emerging Infectious Diseases, Guangdong Provincial Center for Disease Control and PreventionGuangzhou, China; World Health Organization Collaborating Centre for Surveillance, Research and Training of Emerging Infectious DiseasesGuangzhou, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Since early 2013, H7N9-subtype avian influenza virus (AIV) has caused human infection in eastern China. To evaluate AIV contamination and the public risk of infection, we systematically implemented environmental sampling from live poultry markets in Guangdong Province. Through real-time polymerase chain reaction assays and next-generation sequencing, we generated full nucleotide sequences of all 10 H6N6 AIVs isolated during sampling. Focusing on sequence analyses of hemagglutinin genes of the 10 H6N6 AIVs revealed that the viruses were low pathogenic AIVs with the typical hemagglutinin cleavage site of P-Q-I-E-T-R-G. The hemagglutinin, neuraminidase, and nucleocapsid genes of nine AIVs were of ST2853-like (H6-subtype) lineage, ST192-like (N6-subtype) lineage, and HN573-like (H6-subtype) lineage, respectively; whereas the other five genes were of ST339-like (H6-subtype) lineage. However, the polymerase PB2 and nucleocapsid genes of one strain (HZ057) were of GS/GD-like (H5N1-subtype) and ST339-like lineages. Phylogenic analysis revealed that all eight genes of the 10 viruses belonged to Eurasian avian lineage. Altogether, the 10 AIVs were reassortants of different genetic groups of exchanges with the same virus subtype, thus illustrating the genetic diversity and complexity of H6N6-subtype AIVs in Guangdong Province.

Indexed as

avian influenza virusGuangdongH6N6live poultry marketreassortment

Identifiers

PMID26903958
PMCPMC4742543

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.