Evidence map›Paper›PMID 26903514›Full record

ArticleThe Journal of biological chemistry2016

Molecular Insights into Toluene Sensing in the TodS/TodT Signal Transduction System.

Serry Koh, Jungwon Hwang, Koushik Guchhait, Eun-Gyeong Lee, Sang-Yoon Kim, Sujin Kim, Sangmin Lee, Jeong Min Chung, Hyun Suk Jung, Sang Jun Lee and 5 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
7.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
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  9. Transcriptomic analysis of Burkholderia cenocepacia CEIB S5-2 during methyl parathion degradation.Environmental science and pollution research international · 2021
    Article
  10. PAS domains in bacterial signal transduction.Current opinion in microbiology · 2021
    Review
  11. Article
  12. Article
  13. Crystal structure of theThe Journal of biological chemistry · 2019
    Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 1 country.

Serry KohFrom the Infection and Immunity Research Center, skohtn@kribb.re.kr.
Jungwon HwangFrom the Infection and Immunity Research Center.
Koushik GuchhaitFrom the Infection and Immunity Research Center, the Biosystems and Bioengineering Program, University of Science and Technology, Daejeon 305-350, Korea.
Eun-Gyeong Leethe Biosystems and Bioengineering Program, University of Science and Technology, Daejeon 305-350, Korea the Biochemicals and Synthetic Biology Research Center, and.
Sang-Yoon Kimthe Biochemicals and Synthetic Biology Research Center, and.
Sujin Kimthe Biochemicals and Synthetic Biology Research Center, and.
Sangmin Leethe Department of Biochemistry, College of Natural Sciences, Kangwon National University, Chuncheon, Gangwon-do 200-701, Korea, and.
Jeong Min Chungthe Department of Biochemistry, College of Natural Sciences, Kangwon National University, Chuncheon, Gangwon-do 200-701, Korea, and.
Hyun Suk Jungthe Department of Biochemistry, College of Natural Sciences, Kangwon National University, Chuncheon, Gangwon-do 200-701, Korea, and.
Sang Jun LeeFrom the Infection and Immunity Research Center, the Biosystems and Bioengineering Program, University of Science and Technology, Daejeon 305-350, Korea.
Choong-Min Ryuthe Biosystems and Bioengineering Program, University of Science and Technology, Daejeon 305-350, Korea the Molecular Phytobacteriology Laboratory, Korea Research Institute of Bioscience and Biotechnology, Daejeon 305-806, Korea.
Seung-Goo Leethe Biosystems and Bioengineering Program, University of Science and Technology, Daejeon 305-350, Korea the Biochemicals and Synthetic Biology Research Center, and.
Tae-Kwang OhFrom the Infection and Immunity Research Center, the Biosystems and Bioengineering Program, University of Science and Technology, Daejeon 305-350, Korea.
Ohsuk Kwonthe Biosystems and Bioengineering Program, University of Science and Technology, Daejeon 305-350, Korea the Biochemicals and Synthetic Biology Research Center, and oskwon@kribb.re.kr.
Myung Hee KimFrom the Infection and Immunity Research Center, the Biosystems and Bioengineering Program, University of Science and Technology, Daejeon 305-350, Korea mhk8n@kribb.re.kr.
Korea Research Institute of Bioscience and Biotechnology · KRKorea University of Science and Technology · KRKangwon National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

TodS is a sensor kinase that responds to various monoaromatic compounds, which either cause an agonistic or antagonistic effect on phosphorylation of its cognate response regulator TodT, and controls tod operon expression in Pseudomonas putida strains. We describe a molecular sensing mechanism of TodS that is activated in response to toluene. The crystal structures of the TodS Per-Arnt-Sim (PAS) 1 sensor domain (residues 43-164) and its complex with toluene (agonist) or 1,2,4-trimethylbenzene (antagonist) show a typical β2α3β3 PAS fold structure (residues 45-149), forming a hydrophobic ligand-binding site. A signal transfer region (residues 150-163) located immediately after the canonical PAS fold may be intrinsically flexible and disordered in both apo-PAS1 and antagonist-bound forms and dramatically adapt an α-helix upon toluene binding. This structural change in the signal transfer region is proposed to result in signal transmission to activate the TodS/TodT two-component signal transduction system. Site-directed mutagenesis and β-galactosidase assays using a P. putida reporter strain system verified the essential residues involved in ligand sensing and signal transfer and suggest that the Phe(46) residue acts as a ligand-specific switch.

Indexed as

Bacterial ProteinsProtein FoldingProtein KinasesPseudomonas putidaTolueneTrans-ActivatorsCrystallography, X-RayOperonProtein Structure, SecondaryProtein Structure, TertiarySignal TransductionBacterial ProteinsProtein KinasesTodS protein, Pseudomonas putidaTodT protein, Pseudomonas putidaTolueneTrans-Activatorsbacterial signal transductionbiodegradationhistidine kinasePseudomonasx-ray crystallography

Identifiers

PMID26903514
PMCPMC4861429
OpenAlexW2280170473

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.