Evidence map›Paper›PMID 26903512›Full record

ArticleThe Journal of biological chemistry2016

The Proliferating Cell Nuclear Antigen (PCNA)-interacting Protein (PIP) Motif of DNA Polymerase η Mediates Its Interaction with the C-terminal Domain of Rev1.

Elizabeth M Boehm, Kyle T Powers, Christine M Kondratick, Maria Spies, Jon C D Houtman, M Todd Washington

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 49 citations in OpenAlex.

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  18. Lsm12 Mediates Deubiquitination of DNA Polymerase η To HelpApplied and environmental microbiology · 2019
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Elizabeth M BoehmFrom the Departments of Biochemistry and.
Kyle T PowersFrom the Departments of Biochemistry and.
Christine M KondratickFrom the Departments of Biochemistry and.
Maria SpiesFrom the Departments of Biochemistry and.
Jon C D HoutmanMicrobiology, Carver College of Medicine, University of Iowa, Iowa City, Iowa 52242.
M Todd WashingtonFrom the Departments of Biochemistry and todd-washington@uiowa.edu.
University of Iowa · US

Funding

Viral VectorP30CA086862 · NCI · UNIVERSITY OF IOWA · PI Douglas Robert Spitz · 2000 to 2026
$70.0M
Mechanisms of Damaged DNA Replication in EukaryotesR01GM081433 · NIGMS · UNIVERSITY OF IOWA · PI WASHINGTON, M. TODD · 2008 to 2021
$4.2M
Predoctoral Training in the Pharmacological SciencesT32GM067795 · NIGMS · UNIVERSITY OF IOWA · PI STRACK, STEFAN · 2004 to 2021
$3.4M
Human DNA Replication Machines: Structure-Function of Polymerase Alpha-PrimaseR01GM101167 · NIGMS · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI TAHIROV, TAHIR H · 2013 to 2017
$1.9M
Regulation of unwinding and remodeling activities in FeS-DNA helicasesR01GM108617 · NIGMS · UNIVERSITY OF IOWA · PI SPIES, MARIA · 2014 to 2018
$1.6M
SUMOylation and ubiquitylation of PCNA in recombination and translesion synthesisR01GM108027 · NIGMS · UNIVERSITY OF IOWA · PI WASHINGTON, M. TODD · 2013 to 2016
$1.4M
NIGMS NIH HHS R01 GM081433NIGMS NIH HHS R01 GM101167NIGMS NIH HHS R01 GM108027NIGMS NIH HHS R01 GM108617NIGMS NIH HHS T32 GM067795
6 · The paper itself

Abstract

Y-family DNA polymerases, such as polymerase η, polymerase ι, and polymerase κ, catalyze the bypass of DNA damage during translesion synthesis. These enzymes are recruited to sites of DNA damage by interacting with the essential replication accessory protein proliferating cell nuclear antigen (PCNA) and the scaffold protein Rev1. In most Y-family polymerases, these interactions are mediated by one or more conserved PCNA-interacting protein (PIP) motifs that bind in a hydrophobic pocket on the front side of PCNA as well as by conserved Rev1-interacting region (RIR) motifs that bind in a hydrophobic pocket on the C-terminal domain of Rev1. Yeast polymerase η, a prototypical translesion synthesis polymerase, binds both PCNA and Rev1. It possesses a single PIP motif but not an RIR motif. Here we show that the PIP motif of yeast polymerase η mediates its interactions both with PCNA and with Rev1. Moreover, the PIP motif of polymerase η binds in the hydrophobic pocket on the Rev1 C-terminal domain. We also show that the RIR motif of human polymerase κ and the PIP motif of yeast Msh6 bind both PCNA and Rev1. Overall, these findings demonstrate that PIP motifs and RIR motifs have overlapping specificities and can interact with both PCNA and Rev1 in structurally similar ways. These findings also suggest that PIP motifs are a more versatile protein interaction motif than previously believed.

Indexed as

Amino Acid MotifsDNA-Binding ProteinsDNA-Directed DNA PolymeraseHumansNuclear ProteinsNucleotidyltransferasesProliferating Cell Nuclear AntigenProtein BindingProtein Structure, TertiarySaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsY-Family DNA PolymerasesDNA-Binding ProteinsDNA-Directed DNA PolymeraseG-T mismatch-binding proteinMSH6 protein, S cerevisiaeNuclear ProteinsNucleotidyltransferasesPOLN protein, humanProliferating Cell Nuclear AntigenREV1 protein, humanREV1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsY-Family DNA PolymerasesDNA damageDNA polymeraseDNA repairDNA replicationmutagenesistranslesion synthesis

Identifiers

PMID26903512
PMCPMC4861442
OpenAlexW2342262262

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.