Evidence map›Paper›PMID 26903175›Full record

ArticleScientific reports2016

A common mechanism involving the TORC1 pathway can lead to amphotericin B-persistence in biofilm and planktonic Saccharomyces cerevisiae populations.

Rasmus Bojsen, Birgitte Regenberg, David Gresham, Anders Folkesson

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 40 citations in OpenAlex.

  1. [Chlorhexidine and Polident Induce the Formation ofSichuan da xue xue bao. Yi xue ban = Journal of Sichuan University. Medical science edition · 2026
    Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Review
  7. Common virulence factors betweenCurrent research in microbial sciences · 2024
    Review
  8. Review
  9. Targeting Virulence Factors ofFoods (Basel, Switzerland) · 2022
    Review
  10. Review
  11. Article
  12. Studying Bacterial Persistence: Established Methods and Current Advances.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Article
  19. Candida glabrata Biofilms: How Far Have We Come?Journal of fungi (Basel, Switzerland) · 2017
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Rasmus BojsenNational Veterinary Institute, Technical University of Denmark, Frederiksberg, Denmark.
Birgitte RegenbergDepartment of Biology, University of Copenhagen, Copenhagen, Denmark.
David GreshamDepartment of Biology, Center for Genomics and Systems Biology, New York University, New York, USA.
Anders FolkessonNational Veterinary Institute, Technical University of Denmark, Frederiksberg, Denmark.
Technical University of Denmark · DKNew York University · USUniversity of Copenhagen · DK

Funding

Regulation of Quiescence in Eukaryotic CellsR01GM107466 · NIGMS · NEW YORK UNIVERSITY · PI GRESHAM, DAVID · 2013 to 2022
$3.0M
NIGMS NIH HHS 1R01GM107466-01NIGMS NIH HHS R01 GM107466
6 · The paper itself

Abstract

Fungal infections are an increasing clinical problem. Decreased treatment effectiveness is associated with biofilm formation and drug recalcitrance is thought to be biofilm specific. However, no systematic investigations have tested whether resistance mechanisms are shared between biofilm and planktonic populations. We performed multiplexed barcode sequencing (Bar-seq) screening of a pooled collection of gene-deletion mutants cultivated as biofilm and planktonic cells. Screening for resistance to the ergosterol-targeting fungicide amphotericin B (AmB) revealed that the two growth modes had significant overlap in AmB-persistent mutants. Mutants defective in sterol metabolism, ribosome biosynthesis, and the TORC1 and Ras pathways showed increased persistence when treated with AmB. The ras1, ras2 and tor1 mutants had a high-persister phenotype similar to wild-type biofilm and planktonic cells exposed to the TORC1 pathway inhibitor rapamycin. Inhibition of TORC1 with rapamycin also increased the proportion of persisters in Candida albicans and Candida glabrata. We propose that decreased TORC1-mediated induction of ribosome biosynthesis via Ras can lead to formation of AmB-persister cells regardless of whether the cells are in planktonic or biofilm growth mode. Identification of common pathways leading to growth mode-independent persister formation is important for developing novel strategies for treating fungal infections.

Indexed as

Gene Expression Regulation, FungalAmphotericin BAntifungal AgentsBiofilmsCandida albicansCandida glabrataDrug Resistance, FungalErgosterolMutationPhosphatidylinositol 3-KinasesPlanktonras ProteinsRibosomesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence Analysis, DNAAmphotericin BAntifungal AgentsErgosterolPhosphatidylinositol 3-KinasesRAS1 protein, S cerevisiaeRAS2 protein, S cerevisiaeras ProteinsSaccharomyces cerevisiae ProteinsSirolimusTOR1 protein, S cerevisiaeTORC1 protein complex, S cerevisiaeTranscription Factors

Identifiers

PMID26903175
PMCPMC4763212
OpenAlexW2296574497

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.