Evidence map›Paper›PMID 26902414›Full record

ArticleBiochemical pharmacology2016

Tryptophan 299 is a conserved residue of human pregnane X receptor critical for the functional consequence of ligand binding.

Monimoy Banerjee, Sergio C Chai, Jing Wu, Delira Robbins, Taosheng Chen

Open access · greenAbstract read
In one paragraph

Article in Biochemical pharmacology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.6field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Monimoy BanerjeeDepartment of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, TN 38105, USA.
Sergio C ChaiDepartment of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, TN 38105, USA.
Jing WuDepartment of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, TN 38105, USA.
Delira RobbinsDepartment of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, TN 38105, USA.
Taosheng ChenDepartment of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, TN 38105, USA. Electronic address: taosheng.chen@stjude.org.
St. Jude Children's Research Hospital · US

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
Regulation of PXR by cell cycle and phosphorylationR01GM086415 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHEN, TAOSHENG · 2010 to 2013
$1.3M
Regulation of drug disposition by a novel microRNA-mediated pathwayR01GM110034 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHEN, TAOSHENG · 2014 to 2016
$998k
NCI NIH HHS P30 CA021765NIGMS NIH HHS R01 GM086415NIGMS NIH HHS R01GM086415NIGMS NIH HHS R01 GM110034NIGMS NIH HHS R01GM110034
6 · The paper itself

Abstract

PXR is a xenobiotic receptor that regulates drug metabolism by regulating the expression of drug-metabolizing enzymes including CYP3A4. It can be modulated by chemicals with different structures, functional groups and sizes. X-ray crystal structures of the ligand binding domain of human PXR (hPXR) alone or bound with agonists reveal a highly hydrophobic ligand binding pocket where the aromatic amino acid residue W299 appears to play a critical role in ligand binding. Here, we have investigated the role of W299 on the functional consequence of hPXR ligand binding. We first found that substitution of W299 with a hydrophobic residue retained its response to rifampicin, but substitution with a charged residue altered such agonist response in activating the transcription of CYP3A4. The activity of hPXR mutants on CYP3A4 expression correlates with the ability of hPXR mutants to interact with co-activator SRC-1. We further demonstrated that the effect of replacing W299 by residues with different side chains on hPXR's function varied depending on the specific agonist used. Finally we interpreted the cellular activity of the hPXR mutants by analyzing reported crystallographic data and proposing a model. Our findings reveal the essential role of W299 in the transactivation of hPXR in response to agonist binding, and provide useful information for designing modulators of hPXR.

Indexed as

AlanineAmino Acid SubstitutionBenzenesulfonamidesBinding SitesComputational BiologyCrystallography, X-RayCytochrome P-450 CYP3ADiphosphonatesEpithelial CellsFluorocarbonsHep G2 CellsHumansHydrocarbons, FluorinatedLigandsLuciferasesMutationAlanineBenzenesulfonamidesCYP3A4 protein, humanCytochrome P-450 CYP3ADiphosphonatesFluorocarbonsHydrocarbons, FluorinatedLigandsLuciferasesPregnane X ReceptorReceptors, SteroidSR 12813SulfonamidesT0901317TryptophanCYP3A4PXRSARTranscriptional regulationXenobiotic receptor

Identifiers

PMID26902414
PMCPMC4778391
OpenAlexW2285037412

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.