Evidence map›Paper›PMID 26901190›Full record

ArticleInternational journal of molecular sciences2016

Deep Sequencing and Screening of Differentially Expressed MicroRNAs Related to Milk Fat Metabolism in Bovine Primary Mammary Epithelial Cells.

Binglei Shen, Liying Zhang, Chuanjiang Lian, Chunyan Lu, Yonghong Zhang, Qiqi Pan, Runjun Yang, Zhihui Zhao

Open access · goldAbstract readComparative Study
In one paragraph

Article in International journal of molecular sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.4field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Effects of Genetic Polymorphism in theAnimals : an open access journal from MDPI · 2024
    Article
  5. Article
  6. miR-497 RegulatesGenes · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Effects of polymorphism of theArchives animal breeding · 2021
    Article
  17. Article
  18. Article
  19. Article
  20. RumimiR: a detailed microRNA database focused on ruminant species.Database : the journal of biological databases and curation · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Binglei ShenCollege of Animal Science, Jilin University, 5333 Xi'an Road, Changchun 130062, China. binglei514@163.com.
Liying ZhangCollege of Animal Science, Jilin University, 5333 Xi'an Road, Changchun 130062, China. lyzhang@jlu.edu.cn.
Chuanjiang LianNational Key Laboratory of Veterinary Biotechnology and Laboratory Animal and Comparative Medicine Unit, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150001, China. lianchuanjiang@caas.cn.
Chunyan LuCollege of Animal Science, Jilin University, 5333 Xi'an Road, Changchun 130062, China. cylu@jlu.edu.cn.
Yonghong ZhangCollege of Animal Science, Jilin University, 5333 Xi'an Road, Changchun 130062, China. yyzhang@jlu.edu.cn.
Qiqi PanCollege of Animal Science and Veterinary Medicine, Heilongjiang Bayi Agricultural University, Daqing 163319, China. 18004598498@163.com.
Runjun YangCollege of Animal Science, Jilin University, 5333 Xi'an Road, Changchun 130062, China. yrj@jlu.edu.cn.
Zhihui ZhaoCollege of Animal Science, Jilin University, 5333 Xi'an Road, Changchun 130062, China. zhzhao@jlu.edu.cn.
Jilin University · CNChinese Academy of Agricultural Sciences · CNHeilongjiang Bayi Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Milk fat is a key factor affecting milk quality and is also a major trait targeted in dairy cow breeding. To determine how the synthesis and the metabolism of lipids in bovine milk is regulated at the miRNA level, primary mammary epithelial cells (pMEC) derived from two Chinese Holstein dairy cows that produced extreme differences in milk fat percentage were cultured by the method of tissue nubbles culture. Small RNA libraries were constructed from each of the two pMEC groups, and Solexa sequencing and bioinformatics analysis were then used to determine the abundance of miRNAs and their differential expression pattern between pMECs. Target genes and functional prediction of differentially expressed miRNAs by Gene Ontology and the Kyoto Encyclopedia of Genes and Genomes analysis illustrated their roles in milk fat metabolism. Results show that a total of 292 known miRNAs and 116 novel miRNAs were detected in both pMECs. Identification of known and novel miRNA candidates demonstrated the feasibility and sensitivity of sequencing at the cellular level. Additionally, 97 miRNAs were significantly differentially expressed between the pMECs. Finally, three miRNAs including bta-miR-33a, bta-miR-152 and bta-miR-224 whose predicted target genes were annotated to the pathway of lipid metabolism were screened and verified by real-time qPCR and Western-blotting experiments. This study is the first comparative profiling of the miRNA transcriptome in pMECs that produce different milk fat content.

Indexed as

Lipid MetabolismAnimalsCattleComputational BiologyEpithelial CellsFemaleGene Expression ProfilingGene Expression RegulationHigh-Throughput Nucleotide SequencingMammary Glands, AnimalMicroRNAsMilkMicroRNAsdairy cowmicroRNAmilk fatprimary mammary epithelial cellSolexa sequencing

Identifiers

PMID26901190
PMCPMC4783934
OpenAlexW2274312711

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.