Evidence map›Paper›PMID 26896675›Full record

ArticleeLife2016

A genome-wide resource for the analysis of protein localisation in Drosophila.

Mihail Sarov, Christiane Barz, Helena Jambor, Marco Y Hein, Christopher Schmied, Dana Suchold, Bettina Stender, Stephan Janosch, Vinay Vikas K J, R T Krishnan and 16 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 223 papers.

0numbers the graph read from it
0cells of the map it votes in
223citing papers in PubMed
22.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

223 citing papers in PubMed, 403 citations in OpenAlex.

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163 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

26 authors at 6 institutions in 4 countries.

Mihail SarovMax Planck Institute of Cell Biology and Genetics, Dresden, Germany.ORCID http://orcid.org/0000-0003-2895-4087
Christiane BarzMuscle Dynamics Group, Max Planck Institute of Biochemistry, Martinsried, Germany.
Helena JamborMax Planck Institute of Cell Biology and Genetics, Dresden, Germany.
Marco Y HeinDepartment of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany.ORCID http://orcid.org/0000-0002-9490-2261
Christopher SchmiedMax Planck Institute of Cell Biology and Genetics, Dresden, Germany.
Dana SucholdMax Planck Institute of Cell Biology and Genetics, Dresden, Germany.
Bettina StenderMuscle Dynamics Group, Max Planck Institute of Biochemistry, Martinsried, Germany.
Stephan JanoschMax Planck Institute of Cell Biology and Genetics, Dresden, Germany.
Vinay Vikas K JCentre for Cellular and Molecular Platforms, National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, India.ORCID http://orcid.org/0000-0003-1328-9395
R T KrishnanCentre for Cellular and Molecular Platforms, National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, India.
Aishwarya KrishnamoorthyCentre for Cellular and Molecular Platforms, National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, India.ORCID http://orcid.org/0000-0001-8245-3828
Irene R S FerreiraMuscle Dynamics Group, Max Planck Institute of Biochemistry, Martinsried, Germany.
Radoslaw K EjsmontMax Planck Institute of Cell Biology and Genetics, Dresden, Germany.
Katja FinklMuscle Dynamics Group, Max Planck Institute of Biochemistry, Martinsried, Germany.
Susanne HasseMax Planck Institute of Cell Biology and Genetics, Dresden, Germany.
Philipp KämpferHeidelberg Institute of Theoretical Studies, Heidelberg, Germany.
Nicole PlewkaMuscle Dynamics Group, Max Planck Institute of Biochemistry, Martinsried, Germany.
Elisabeth VinisMax Planck Institute of Cell Biology and Genetics, Dresden, Germany.
Siegfried SchloissnigHeidelberg Institute of Theoretical Studies, Heidelberg, Germany.
Elisabeth KnustMax Planck Institute of Cell Biology and Genetics, Dresden, Germany.
Volker HartensteinDepartment of Molecular Cell and Developmental Biology, University of California, Los Angeles, Los Angeles, United States.
Matthias MannDepartment of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany.
Mani RamaswamiInstitute of Neuroscience, Trinity College Dublin, Dublin, Ireland.
K VijayRaghavanCentre for Cellular and Molecular Platforms, National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, India.ORCID http://orcid.org/0000-0002-4705-5629
Pavel TomancakMax Planck Institute of Cell Biology and Genetics, Dresden, Germany.ORCID http://orcid.org/0000-0002-2222-9370
Frank SchnorrerMuscle Dynamics Group, Max Planck Institute of Biochemistry, Martinsried, Germany.ORCID http://orcid.org/0000-0002-9518-7263
Max Planck Institute of Molecular Cell Biology and Genetics · DEMax Planck Institute of Biochemistry · DETata Institute of Fundamental Research · INHeidelberg Institute for Theoretical Studies · DETrinity College Dublin · IEUniversity of California, Los Angeles · US

Funding

Resource Component: Acquisition, maintenance and distribution of Drosophila stocksP40OD018537 · OD · TRUSTEES OF INDIANA UNIVERSITY · PI Annette L. Parks · 2014 to 2026
$13.5M
Lineage-associated wiring properties of Drosphila brain neuronsR01NS054814 · NINDS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HARTENSTEIN, VOLKER, LOUIS, MATTHIEU R. P. J. C. G. · 2006 to 2025
$6.6M
NIH HHS P40 OD018537NINDS NIH HHS R01 NS054814
6 · The paper itself

Abstract

The Drosophila genome contains >13000 protein-coding genes, the majority of which remain poorly investigated. Important reasons include the lack of antibodies or reporter constructs to visualise these proteins. Here, we present a genome-wide fosmid library of 10000 GFP-tagged clones, comprising tagged genes and most of their regulatory information. For 880 tagged proteins, we created transgenic lines, and for a total of 207 lines, we assessed protein expression and localisation in ovaries, embryos, pupae or adults by stainings and live imaging approaches. Importantly, we visualised many proteins at endogenous expression levels and found a large fraction of them localising to subcellular compartments. By applying genetic complementation tests, we estimate that about two-thirds of the tagged proteins are functional. Moreover, these tagged proteins enable interaction proteomics from developing pupae and adult flies. Taken together, this resource will boost systematic analysis of protein expression and localisation in various cellular and developmental contexts.

Indexed as

Gene LibraryGenome, InsectAnimalsAnimals, Genetically ModifiedAnimal StructuresDrosophilaDrosophila ProteinsEntomologyGenes, ReporterGreen Fluorescent ProteinsImage Processing, Computer-AssistedMolecular BiologyOptical ImagingRecombinant Fusion ProteinsStaining and LabelingDrosophila ProteinsGreen Fluorescent ProteinsRecombinant Fusion Proteinsdevelopmental biologydrosophilaevolutionary biologygeneticsgenomics<i>d. melanogaster</i>live imagingprotein taggingrecombineeringresourcestem cells

Identifiers

PMID26896675
PMCPMC4805545
OpenAlexW2203265148

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.