Evidence map›Paper›PMID 26896154›Full record

ArticleBMC genetics2016

Genetic analysis of intestinal polyp development in Collaborative Cross mice carrying the Apc (Min/+) mutation.

Alexandra Dorman, Daria Baer, Ian Tomlinson, Richard Mott, Fuad A Iraqi

Erratum issuedOpen access · diamondAbstract read
In one paragraph

Article in BMC genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 29 citations in OpenAlex.

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  8. Systems genetics analysis of oral squamous cell carcinoma susceptibility using the mouse model: current position and new perspective.Mammalian genome : official journal of the International Mammalian Genome Society · 2021
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  15. Glucose tolerance female-specific QTL mapped in collaborative cross mice.Mammalian genome : official journal of the International Mammalian Genome Society · 2017
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Alexandra DormanTel-Aviv University, Tel-Aviv, Israel. alexandra.dorm@gmail.com.
Daria BaerTel-Aviv University, Tel-Aviv, Israel. dariabaer@gmail.com.
Ian TomlinsonUniversity of Oxford, Oxford, UK. iant@well.ox.ac.uk.
Richard MottUniversity of Oxford, Oxford, UK. rmott@well.ox.ac.uk.
Fuad A IraqiTel-Aviv University, Tel-Aviv, Israel. fuadi@post.tau.ac.il.
Tel Aviv University · IL

Funding

Cancer Research UKWellcome TrustWellcome Trust 075491/Z/04Wellcome Trust 083573/Z/07/ZWellcome Trust 085906/Z/08/ZWellcome Trust 090532/Z/09/Z
6 · The paper itself

Abstract

backgroundColorectal cancer is an abnormal tissue development in the colon or rectum. Most of CRCs develop due to somatic mutations, while only a small proportion is caused by inherited mutations. Familial adenomatous polyposis is an inherited genetic disease, which is characterized by colorectal polyps. It is caused by inactivating mutations in the Adenomatous polyposis coli gene. Mice carrying and non-sense mutation in Adenomatous polyposis coli gene at site R850, which designated Apc (R850X/+) (Min), develop intestinal adenomas, while the bulk of the disease is in the small intestine. A number of genetic modifier loci of Min have been mapped, but so far most of the underlying genes have not been identified. In our previous studies, we have shown that Collaborative Cross mice are a powerful tool for mapping loci responsible for phenotypic variation. As a first step towards identification of novel modifiers of Min, we assessed the phenotypic variation between 27 F1 crosses between different Collaborative cross mice and C57BL/6-Min lines.

resultsHere, C57BL/6-Min male mice were mated with females from 27 Collaborative cross lines. F1 offspring were terminated at 23 weeks old and multiple phenotypes were collected: polyp counts, intestine length, intestine weight, packed cell volume and spleen weight. Additionally, in eight selected F1 Collaborative cross-C57BL/6-Min lines, body weight was monitored and compared to control mice carry wildtype Adenomatous polyposis coli gene. We found significant (p < 0.05) phenotypic variation between the 27 F1 Collaborative cross-C57BL/6-Min lines for all the tested phenotypes, and sex differences with traits; Colon, body weight and intestine length phenotypes, only. Heritability calculation showed that these phenotypes are mainly controlled by genetic factors.

conclusionsVariation in polyp development is controlled, an appreciable extent, by genetic factors segregating in the Collaborative cross population and suggests that it is suited for identifying modifier genes associated with Apc (Min/+) mutation, after assessing sufficient number of lines for quantitative trait loci analysis.

Indexed as

Adenomatous Polyposis ColiAnimalsBody WeightColonCrosses, GeneticDisease Models, AnimalFemaleGenetic LociGenetic TestingGenotyping TechniquesGerm-Line MutationIntestinal PolypsIntestine, SmallMaleMiceMice, Inbred C57BL

Identifiers

PMID26896154
PMCPMC4761170
OpenAlexW2277125372

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.