Evidence map›Paper›PMID 26895087›Full record

ArticleeLife2016

Stepwise nucleosome translocation by RSC remodeling complexes.

Bryan T Harada, William L Hwang, Sebastian Deindl, Nilanjana Chatterjee, Blaine Bartholomew, Xiaowei Zhuang

Abstract read
In one paragraph

Article in eLife, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. How does CHD4 slide nucleosomes?Biochemical Society transactions · 2024
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. PlantCHRs: A comprehensive database of plant chromatin remodeling factors.Computational and structural biotechnology journal · 2023
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. The Active Mechanism of Nucleosome Depletion by Poly(dA:dT) Tracts In Vivo.International journal of molecular sciences · 2021
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Bryan T HaradaGraduate Program in Biophysics, Harvard University, Cambridge, United States.
William L HwangGraduate Program in Biophysics, Harvard University, Cambridge, United States.
Sebastian DeindlHoward Hughes Medical Institute, Harvard University, Cambridge, United States.
Nilanjana ChatterjeeDepartment of Epigenetics and Molecular Carcinogenesis, University of Texas M.D. Anderson Cancer Center, Smithville, United States.
Blaine BartholomewDepartment of Epigenetics and Molecular Carcinogenesis, University of Texas M.D. Anderson Cancer Center, Smithville, United States.
Xiaowei ZhuangHoward Hughes Medical Institute, Harvard University, Cambridge, United States.

Funding

Medical Scientist Training ProgramT32GM007753 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALENSKY, LOREN DAVID · 1985 to 2021
$50.0M
TRANSCRIPTIONAL ACTIVATION BY REORGANIZING CHROMATINR01GM048413 · NIGMS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI BARTHOLOMEW, BLAINE · 1998 to 2015
$4.7M
Single-molecule studies of ATP-dependent chromatin remodelingR01GM105637 · NIGMS · HARVARD UNIVERSITY · PI ZHUANG, XIAOWEI · 2013 to 2016
$1.3M
MECHANISM OF RNA POLYMERASE III RECOGNITIONR29GM048413 · NIGMS · SOUTHERN ILLINOIS UNIVERSITY CARBONDALE · PI BARTHOLOMEW, BLAINE · 1993 to 1997
–
NIGMS NIH HHS GM105637NIGMS NIH HHS GM 48413NIGMS NIH HHS R01 GM048413NIGMS NIH HHS R01 GM105637NIGMS NIH HHS T32 GM007753
6 · The paper itself

Abstract

The SWI/SNF-family remodelers regulate chromatin structure by coupling the free energy from ATP hydrolysis to the repositioning and restructuring of nucleosomes, but how the ATPase activity of these enzymes drives the motion of DNA across the nucleosome remains unclear. Here, we used single-molecule FRET to monitor the remodeling of mononucleosomes by the yeast SWI/SNF remodeler, RSC. We observed that RSC primarily translocates DNA around the nucleosome without substantial displacement of the H2A-H2B dimer. At the sites where DNA enters and exits the nucleosome, the DNA moves largely along or near its canonical wrapping path. The translocation of DNA occurs in a stepwise manner, and at both sites where DNA enters and exits the nucleosome, the step size distributions exhibit a peak at approximately 1-2 bp. These results suggest that the movement of DNA across the nucleosome is likely coupled directly to DNA translocation by the ATPase at its binding site inside the nucleosome.

Indexed as

DNA-Binding ProteinsFluorescence Resonance Energy TransferHistonesNucleosomesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsDNA-Binding ProteinsHistonesNucleosomesRSC complex, S cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsbiochemistrybiophysicschromatinFRETremodelingRSCS. cerevisiaesingle-moleculestructural biologySWI/SNF

Identifiers

PMID26895087
PMCPMC4769157

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.