Evidence map›Paper›PMID 26894538›Full record

ArticleActa crystallographica. Section D, Structural biology2016

In meso in situ serial X-ray crystallography of soluble and membrane proteins at cryogenic temperatures.

Chia Ying Huang, Vincent Olieric, Pikyee Ma, Nicole Howe, Lutz Vogeley, Xiangyu Liu, Rangana Warshamanage, Tobias Weinert, Ezequiel Panepucci, Brian Kobilka and 3 more

Abstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. G Protein-Coupled Receptor-Ligand Pose and Functional Class Prediction.International journal of molecular sciences · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. xia2.multiplex: a multi-crystal data-analysis pipeline.Acta crystallographica. Section D, Structural biology · 2022
    Article
  11. Article
  12. Article
  13. Versatile microporous polymer-based supports for serial macromolecular crystallography.Acta crystallographica. Section D, Structural biology · 2021
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Low-doseIUCrJ · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Chia Ying HuangMembrane Structural and Functional Biology Group, School of Medicine and School of Biochemistry and Immunology, Trinity College, Dublin 2, D02 R590, Ireland.
Vincent OliericSwiss Light Source, Paul Scherrer Institute, CH-5232 Villigen, Switzerland.
Pikyee MaMembrane Structural and Functional Biology Group, School of Medicine and School of Biochemistry and Immunology, Trinity College, Dublin 2, D02 R590, Ireland.
Nicole HoweMembrane Structural and Functional Biology Group, School of Medicine and School of Biochemistry and Immunology, Trinity College, Dublin 2, D02 R590, Ireland.
Lutz VogeleyMembrane Structural and Functional Biology Group, School of Medicine and School of Biochemistry and Immunology, Trinity College, Dublin 2, D02 R590, Ireland.
Xiangyu LiuSchool of Medicine, Tsinghua University, Beijing 100084, People's Republic of China.
Rangana WarshamanageSwiss Light Source, Paul Scherrer Institute, CH-5232 Villigen, Switzerland.
Tobias WeinertSwiss Light Source, Paul Scherrer Institute, CH-5232 Villigen, Switzerland.
Ezequiel PanepucciSwiss Light Source, Paul Scherrer Institute, CH-5232 Villigen, Switzerland.
Brian KobilkaSchool of Medicine, Tsinghua University, Beijing 100084, People's Republic of China.
Kay DiederichsFachbereich Biologie, Universität Konstanz, Box 647, D-78457 Konstanz, Germany.
Meitian WangSwiss Light Source, Paul Scherrer Institute, CH-5232 Villigen, Switzerland.
Martin CaffreyMembrane Structural and Functional Biology Group, School of Medicine and School of Biochemistry and Immunology, Trinity College, Dublin 2, D02 R590, Ireland.

Funding

THE MECHANISM OF BETA2 ADRENOCEPTOR ACTIVATIONR01NS028471 · NINDS · STANFORD UNIVERSITY · PI KOBILKA, BRIAN K · 1990 to 2021
$6.7M
NINDS NIH HHS R01 NS028471
6 · The paper itself

Abstract

Here, a method for presenting crystals of soluble and membrane proteins growing in the lipid cubic or sponge phase for in situ diffraction data collection at cryogenic temperatures is introduced. The method dispenses with the need for the technically demanding and inefficient crystal-harvesting step that is an integral part of the lipid cubic phase or in meso method of growing crystals. Crystals are dispersed in a bolus of mesophase sandwiched between thin plastic windows. The bolus contains tens to hundreds of crystals, visible with an in-line microscope at macromolecular crystallography synchrotron beamlines and suitably disposed for conventional or serial crystallographic data collection. Wells containing the crystal-laden boluses are removed individually from hermetically sealed glass plates in which crystallization occurs, affixed to pins on goniometer bases and excess precipitant is removed from around the mesophase. The wells are snap-cooled in liquid nitrogen, stored and shipped in Dewars, and manually or robotically mounted on a goniometer in a cryostream for diffraction data collection at 100 K, as is performed routinely with standard, loop-harvested crystals. The method is a variant on the recently introduced in meso in situ serial crystallography (IMISX) method that enables crystallographic measurements at cryogenic temperatures where crystal lifetimes are enormously enhanced whilst reducing protein consumption dramatically. The new approach has been used to generate high-resolution crystal structures of a G-protein-coupled receptor, α-helical and β-barrel transporters and an enzyme as model integral membrane proteins. Insulin and lysozyme were used as test soluble proteins. The quality of the data that can be generated by this method was attested to by performing sulfur and bromine SAD phasing with two of the test proteins.

Indexed as

AnimalsBacteriaBacterial ProteinsChickensCold TemperatureCrystallizationCrystallography, X-RayInsulinMembrane ProteinsModels, MolecularMuramidasePhase TransitionSolubilitySwineBacterial ProteinsInsulinMembrane ProteinsMuramidaseAlgEbromine SADcubic phaseDgkAexperimental phasingGPCRin mesoin situinsulinkinaselipid cubic phasemembrane proteinmesophasePepTStserial crystallographysponge phasesulfur SADtransporterβ2-adrenergic receptor

Identifiers

PMID26894538
PMCPMC4756617

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.